View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_108 (Length: 230)
Name: NF19631_low_108
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_108 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 59 - 215
Target Start/End: Original strand, 12988105 - 12988262
Alignment:
| Q |
59 |
tagagacactagcatattgtttctaacttcgtc---ataataaacaaaagcattgtttctaacttcttcgtattcataatgtcatttcaaaatatccccg |
155 |
Q |
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| T |
12988105 |
tagagacactagcat--tgtttctaacttcgtcttaataataaaaaaaagcattgtttctaacttcttcgtattcataatgtcatttaaaaatatccccg |
12988202 |
T |
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| Q |
156 |
attttcataggataatattgcatgataagaagcttgtaagcatatacattagttattagt |
215 |
Q |
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| T |
12988203 |
attttcataggataatattgcatgataagaagcttgtaagcatatacattaattattagt |
12988262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 12994468 - 12994534
Alignment:
| Q |
134 |
atgtcatttcaaaatatccccgattttcataggataatattgcatgataagaagcttgtaagcatat |
200 |
Q |
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| T |
12994468 |
atgtcatttcaatatatccccgattttcataggataatattgcaagataagaagcttgtaagcatat |
12994534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 12988008 - 12988051
Alignment:
| Q |
18 |
tgaaaagacacaacgaccattagtagtcattagtcaatcaatag |
61 |
Q |
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| T |
12988008 |
tgaaaagacacaacgaccattagtagtcattagtcaatcaatag |
12988051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 200
Target Start/End: Original strand, 12954107 - 12954173
Alignment:
| Q |
134 |
atgtcatttcaaaatatccccgattttcataggataatattgcatgataagaagcttgtaagcatat |
200 |
Q |
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| T |
12954107 |
atgtcatttgaacatgttccggattttcataggataatcttgcaagataagaaacttgtaagcatat |
12954173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 12948577 - 12948620
Alignment:
| Q |
155 |
gattttcataggataatattgcatgataagaagcttgtaagcat |
198 |
Q |
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| T |
12948577 |
gattttcataggataatcttgcaagataagaaacttgtaagcat |
12948620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 12917020 - 12916959
Alignment:
| Q |
134 |
atgtcatttcaaaatatccccgattttcataggataatattgcatgataagaagcttgtaag |
195 |
Q |
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| T |
12917020 |
atgtcatttcaacaagttccagattttcatagaataatattgcaagataagaaacttgtaag |
12916959 |
T |
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