View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_11 (Length: 555)
Name: NF19631_low_11
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Original strand, 4170315 - 4170845
Alignment:
| Q |
11 |
cacagattgtatacacactttcaaagaaacagcatcgaacaccagttaacacataacagtggaacaatgaagcaacaacccggaaaattaacggtacaaa |
110 |
Q |
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| T |
4170315 |
cacagattgtatacacactttcaaagaaacagcatcgaacatcagttaacacataacagtggaacaatgaagcaacaacccggaaaattaacggtacaaa |
4170414 |
T |
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| Q |
111 |
gctaaagttgcgcgaaacgacttgcaacgaagcccaccgatcgaaccaattccagattctgtaatatcaacccaataatgcaaa-ccaagggatgacgaa |
209 |
Q |
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| T |
4170415 |
gctgaagttgcgcgaaacgacttgcaatgaagcccaccaaacgaaccaattccagattctgtaatatcaacccaataatgcaaatccaagggatgacgaa |
4170514 |
T |
|
| Q |
210 |
tcggagaagaacaacaaacctatgtcataaaacataacaaatctggatcaaacagaaccaaacattacaaatttattaagttcacattagtgttttaagg |
309 |
Q |
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| T |
4170515 |
tcggagaagagcaacaaacctatgtcataaaacataacaaatctggatcaaacagaaccaaacattacaaatttattaagttcacattagtgttttaagg |
4170614 |
T |
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| Q |
310 |
atagatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttccattcttcctcatttctt |
409 |
Q |
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| T |
4170615 |
atagatctcaataagagacaataatccagtacaaggagatattttgtagttttcaaagcctgcttccatgaagagtttcttccattcttcctcatttctc |
4170714 |
T |
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| Q |
410 |
tcttttccatttagacatgaaattgttacattcattaggagctttatttgagtaagttcgttctcttctttcttttcatttattaccatctctatcacaa |
509 |
Q |
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| T |
4170715 |
tcttttccatttagacatgaaattgttacattcattaggagctttatttgagtaagttcgttctcttctttcttttcatttattaccatgtctatcacaa |
4170814 |
T |
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| Q |
510 |
tcacttttcctcttttcccctcagttgtaac |
540 |
Q |
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| T |
4170815 |
tcacttttcctcttttcccctcagttgtaac |
4170845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 294 - 540
Target Start/End: Complemental strand, 4161229 - 4160983
Alignment:
| Q |
294 |
cattagtgttttaaggatagatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttcca |
393 |
Q |
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| T |
4161229 |
cattagtattttaaggatagatctctataagagacattaatccagtaaaaggagatattttgtaatcttggaagcctgcttctataaagagctttttcca |
4161130 |
T |
|
| Q |
394 |
ttcttcctcatttctttcttttccatttagacatgaaattgttacattcattaggagctttatttgagtaagttcgttctcttctttcttttcatttatt |
493 |
Q |
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| T |
4161129 |
ttcttcctcatttctctcttttccattaacacatgaaattgtaacattcatgagtagctttatttgagtaagttggttctcatctttcttttcatttatt |
4161030 |
T |
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| Q |
494 |
accatctctatcacaatcacttttcctcttttcccctcagttgtaac |
540 |
Q |
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| T |
4161029 |
accatatctatcacaatcacttttcctctttttccatcacttgtaac |
4160983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 303 - 540
Target Start/End: Original strand, 4176443 - 4176680
Alignment:
| Q |
303 |
tttaaggatagatctcaataagagacaataatccagtacaaggagatattttgtaggtttcaaagcctgcttccatgaagagtttcttccattcttcctc |
402 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |||||||||| || ||| || || || ||||| |||||||||||||||||||||||||| |
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| T |
4176443 |
tttatggatagatctcaataagagacaaaaatccagtcaaaggagatatcttatagtcttggaaaccagcttctatgaagagtttcttccattcttcctc |
4176542 |
T |
|
| Q |
403 |
atttctttcttttccatttagacatgaaattgttacattcattaggagctttatttgagtaagttcgttctcttctttcttttcatttattaccatctct |
502 |
Q |
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| T |
4176543 |
atttctctcttttccattaagacaagccatgtttacatccataaggagcttaatttgagtaacttgattctcatctttcttttcatttatgaccatatct |
4176642 |
T |
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| Q |
503 |
atcacaatcacttttcctcttttcccctcagttgtaac |
540 |
Q |
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| T |
4176643 |
ataataatcaccttcccttttttcccatcatttgtaac |
4176680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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