View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_114 (Length: 210)
Name: NF19631_low_114
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_114 |
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Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 17408040 - 17407929
Alignment:
| Q |
22 |
acaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcagatatttctcctgagttttgtacaactgtaaaagatattaacacaag |
121 |
Q |
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| T |
17408040 |
acaaagatccaagaaaagaaactggggaccctcaagcctttgaagatcaagcagatatttctcctgagttttgtacagctgtgaaagatattaacatagg |
17407941 |
T |
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| Q |
122 |
tttgagaatgtt |
133 |
Q |
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|||||||||||| |
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| T |
17407940 |
tttgagaatgtt |
17407929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 4049707 - 4049825
Alignment:
| Q |
15 |
aggcagaacaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcagatatttctcctgagttttgtacaactgtaaaagatatta |
114 |
Q |
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|||||| |||||||||||||||||||| ||||| ||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4049707 |
aggcagcacaaagatccaagaaaagaaactggggtccctcaagtctttgaagatcaagcagatatttctcctgagttttgtacagctgtaaaagatatta |
4049806 |
T |
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| Q |
115 |
acacaagtttgagaatgtt |
133 |
Q |
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||| | ||||||||||||| |
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| T |
4049807 |
acaaatgtttgagaatgtt |
4049825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 17412656 - 17412546
Alignment:
| Q |
22 |
acaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcagatatttctcctgagttttgtacaactgtaaaagatattaacacaag |
121 |
Q |
| |
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|||||||||||||||| || |||| ||||||| |||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
17412656 |
acaaagatccaagaaagcaaattggggtccctcaagcctttgaatatcaagtagatatttctcctcagttttgtacaactacaaaagatattaacacaa- |
17412558 |
T |
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| Q |
122 |
tttgagaatgtt |
133 |
Q |
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| T |
17412557 |
cttgagaatgtt |
17412546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 2783433 - 2783518
Alignment:
| Q |
22 |
acaaagatccaagaaaagaagctgggcaccctcaaccctttgaaggtcaagcagatatttctcctgagttttgtacaactgtaaaa |
107 |
Q |
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|||||||||||||||||||| ||||| | |||||||||||||||| |||| |||||| ||||||||||||||||| | |||||||| |
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| T |
2783433 |
acaaagatccaagaaaagaaactggggatcctcaaccctttgaagatcaaacagatacttctcctgagttttgtagagctgtaaaa |
2783518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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