View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_115 (Length: 207)
Name: NF19631_low_115
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_115 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 47 - 191
Target Start/End: Original strand, 7920336 - 7920480
Alignment:
| Q |
47 |
tttcttgatgtgtatgtataccatgatataatttcgaacattactatgggtttacattgaagaattcaaagtacaatttgtaaattccttattttgaatt |
146 |
Q |
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| T |
7920336 |
tttcttgatgtgtatgtataccatgatataatttcgaacattactatgggtttacattgaagaattcaaagtacaatttgtaaattccttattttgaatt |
7920435 |
T |
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| Q |
147 |
ttggaactaccatagtctaagttacatgtagtttgagtggaagat |
191 |
Q |
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| T |
7920436 |
ttggaactaccatagtctaagttacatgtagtttgagtggaagat |
7920480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7920306 - 7920352
Alignment:
| Q |
1 |
atttaaatttgtaattgtgatcccacaacatttcttgatgtgtatgt |
47 |
Q |
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| T |
7920306 |
atttaaatttgtaattgtgatcccacaacatttcttgatgtgtatgt |
7920352 |
T |
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