View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_12 (Length: 550)
Name: NF19631_low_12
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Original strand, 3138060 - 3138583
Alignment:
| Q |
13 |
aatatagttttaaaattaaaggcattgtttctacctatttatttaaagctatggccacctgcttaatttgtttttactgtttcaattcagattgctcgtc |
112 |
Q |
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| T |
3138060 |
aatatagttttaaaattaaaggcattgtttctacctatttatttaaagctatggccacctgcttaatttgtttttactgtttcaattcagattgctcgtc |
3138159 |
T |
|
| Q |
113 |
ggttattgggaaaacttttaattgatgtgaggaacactcgagaggaagcaattagtgtcgcagagctaaagaataaccaagaaaattcattatccacaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3138160 |
ggttattgggaaaacttttaattgatgtgaggaacactcgagaggaagcaattagtgtcgcagagctaaagaataaccaagaaaattcattatccacaaa |
3138259 |
T |
|
| Q |
213 |
caatgaaaaggaagatacagaggccaagtcaaaaaattcccataagaatgatgaaatacgaaaatgcagcactatgagtgaaacatcaatggatcaggac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3138260 |
caatgaaaaggaagatacagaggccaagtcaaaaaattcccataagaatgatgaaatacgaaaatgtagcactatgagtgaaacatcaatggatcaggac |
3138359 |
T |
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| Q |
313 |
gatgatgatgataaagagaccaaatatcgtttagatccaaagtgaatatcaggttatcttatgagttttgtatattattatgctctattctaatctattt |
412 |
Q |
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| T |
3138360 |
gatgatgatgacaaagagaccaaatatcgtttagatccaaagtgaatatcaggttatcttatgagttttgtatattattatgctctattctaatctattt |
3138459 |
T |
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| Q |
413 |
attctccaccaggtatgcaaatgtgaagacacctgaccgccatgtgcgaacacgcctatacttcacatcagtgagtgctgcactgtgttataaatttttg |
512 |
Q |
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| T |
3138460 |
attctccaccaggtatgcaaatgtgaagacacctgaccgccatgtgcgaacacgcctatacttcacatcagtgagtgctgcactgtgttataaatttttg |
3138559 |
T |
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| Q |
513 |
tgaggatatttaatgctcgatact |
536 |
Q |
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| T |
3138560 |
tgaggatatttaatgctcgatact |
3138583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 94 - 362
Target Start/End: Original strand, 1930641 - 1930912
Alignment:
| Q |
94 |
tcaattcagattgctcgtcggttattgggaaaacttttaattgatgtgaggaacactcgagaggaagcaattagtgtcgcagagctaaagaataaccaag |
193 |
Q |
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||||| ||||| || ||||| ||||||||||||||||| |||||| ||||||| || || |||||||| |||||||| || ||| |||||| ||||||| |
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| T |
1930641 |
tcaatccagatcgcacgtcgattattgggaaaacttttgattgatctgaggaatacccgtgaggaagccattagtgttgcggagttaaagagcaaccaag |
1930740 |
T |
|
| Q |
194 |
aaaa---ttcattatccacaaacaatgaaaaggaagatacagaggccaagtcaaaaaattcccataagaatgatgaaatacgaaaatgcagcactatgag |
290 |
Q |
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| T |
1930741 |
accacgattcatcattcccaaaaactgaaaaggaaaatacagatgccaaaccaaaacatctaaataagaatggtgaactaagaaaatccatcactttgaa |
1930840 |
T |
|
| Q |
291 |
tgaaacatcaatggatcaggacgatgatgatgataaagagaccaaatatcgtttagatccaaagtgaatatc |
362 |
Q |
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|| | ||||||||| || || |||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
1930841 |
cgatatatcaatggaccaagatgatgatgatgataaagagaccaaatatcgtttggatccaaagtaaatatc |
1930912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 389 - 492
Target Start/End: Original strand, 1930964 - 1931067
Alignment:
| Q |
389 |
attatgctctattctaatctatttattctccaccaggtatgcaaatgtgaagacacctgaccgccatgtgcgaacacgcctatacttcacatcagtgagt |
488 |
Q |
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|||||| | ||||||||| | |||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||| |||||| |
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| T |
1930964 |
attatgttgtattctaatattgttattctctgccaggtatgcaaatgtaaagacacctgaccgccacgtgcgaacacgcttatacttcacatcggtgagt |
1931063 |
T |
|
| Q |
489 |
gctg |
492 |
Q |
| |
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|||| |
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| T |
1931064 |
gctg |
1931067 |
T |
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