View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_low_13 (Length: 535)

Name: NF19631_low_13
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_low_13
NF19631_low_13
[»] chr8 (8 HSPs)
chr8 (18-525)||(45462392-45462887)
chr8 (107-263)||(451940-452096)
chr8 (118-263)||(7093775-7093920)
chr8 (118-263)||(7097508-7097653)
chr8 (437-525)||(29823415-29823503)
chr8 (118-227)||(29822994-29823103)
chr8 (438-508)||(7093422-7093492)
chr8 (438-508)||(7097155-7097225)
[»] chr7 (5 HSPs)
chr7 (69-263)||(1608447-1608640)
chr7 (69-263)||(2188174-2188367)
chr7 (437-525)||(19632172-19632260)
chr7 (69-227)||(19632574-19632730)
chr7 (437-525)||(2188646-2188734)
[»] chr3 (1 HSPs)
chr3 (118-263)||(8377904-8378049)
[»] chr5 (5 HSPs)
chr5 (437-525)||(37626659-37626747)
chr5 (437-525)||(37803199-37803287)
chr5 (136-227)||(37627061-37627152)
chr5 (118-189)||(37803603-37803674)
chr5 (118-263)||(14275927-14276073)
[»] chr1 (2 HSPs)
chr1 (69-263)||(41313567-41313761)
chr1 (437-525)||(41313199-41313287)
[»] scaffold0070 (1 HSPs)
scaffold0070 (118-263)||(58585-58731)
[»] chr2 (4 HSPs)
chr2 (437-525)||(19216293-19216381)
chr2 (136-263)||(19215886-19216013)
chr2 (118-242)||(19589612-19589736)
chr2 (445-525)||(19591925-19592005)
[»] scaffold2006 (1 HSPs)
scaffold2006 (437-525)||(1002-1090)
[»] chr4 (3 HSPs)
chr4 (438-525)||(639416-639503)
chr4 (136-227)||(11991782-11991874)
chr4 (438-522)||(11991371-11991456)


Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Complemental strand, 45462887 - 45462392
Alignment:
Q  18 taatctgtgtttctaactggtggttacgataagattagtttcgttggacattcattgggagcgatctattttgtggagttagttagcttggtgtcacaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45462887 taatctgtgtttctaactggtggttacgataagattagtttagttggacattcattgggagcgatctattttgtggagttagttagcttggtgtcacaca 45462788  T
Q  118 cataaattcatagttgtgtggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctttttagtgctcata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45462787 cataaattcatagttgtgtggtgcccataattgattgagacccaaag-----attgtcgataattagttgggacttgtcgttttctttttagtgctcata 45462693  T
Q  218 attgattgagagacattgttttcttttagtgtccatcattggttggacctacggttgaacgttcatgattggttgaagcccataacatggaactatgcat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45462692 attgattgagagacattgttttcttttagtgtccatcattggttggacctacggttgaatgttcatgattggttgaagcccataacatggaactatgcat 45462593  T
Q  318 ttcttgagtcgactttgtgttttgggtgttggtattttgtgtattcccttcctgatatatctggtagacttgaaatacatgttatataaatgtgtaagtt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45462592 ttcttgagtcgactttgtgttttgggtgttggtattttgtgtattcccttcctgatatatctggtagacttgaaatacatgttatatacatgtgtaagtt 45462493  T
Q  418 gtgtaannnnnnnnnnngttttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtg 517  Q
    ||||||            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45462492 gtgtaattttt-------ttttgtttgggagttgatccttttccattttttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtg 45462400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 107 - 263
Target Start/End: Complemental strand, 452096 - 451940
Alignment:
Q  107 ggtgtcacacacataaattcatagttgtgtggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctttt 206  Q
    |||||||||  |||| |||||| || |||||||||||||||||| ||| ||||| ||||||||| || | |||||| |||||| ||| | |||| |||||    
T  452096 ggtgtcacatgcatacattcattgtcgtgtggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggggcttattgtttcctttt 451997  T
Q  207 tagtgctcataattgattgagagacattgttttcttttagtgtccatcattggttgg 263  Q
     |||||||||||||| ||| ||  | ||| |||||||| ||| |||| |||||||||    
T  451996 gagtgctcataattggttgggactcgttgatttcttttggtgcccataattggttgg 451940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 7093920 - 7093775
Alignment:
Q  118 cataaattcatagttgtgtggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctttttagtgctcata 217  Q
    |||| |||||| |||| |||||||||||||||| ||  ||||| ||||||||| || | |||||| |||||| ||| | |||| ||| | ||||||||||    
T  7093920 catacattcattgttgcgtggtgcccataattggttaggacccgaagtcttgagtgcccataattggttggggcttattgtttccttgtgagtgctcata 7093821  T
Q  218 attgattgagagacattgttttcttttagtgtccatcattggttgg 263  Q
    |||| |||||   | ||| |||||||| ||| |||| |||||||||    
T  7093820 attggttgaggctcgttgatttcttttggtgcccataattggttgg 7093775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 7097653 - 7097508
Alignment:
Q  118 cataaattcatagttgtgtggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctttttagtgctcata 217  Q
    |||| |||||| |||| |||||||||||||||| ||  ||||| ||||||||| || | |||||| |||||| ||| | |||| ||| | ||||||||||    
T  7097653 catacattcattgttgcgtggtgcccataattggttaggacccgaagtcttgagtgcccataattggttggggcttattgtttccttgtgagtgctcata 7097554  T
Q  218 attgattgagagacattgttttcttttagtgtccatcattggttgg 263  Q
    |||| |||||   | ||| |||||||| ||| |||| |||||||||    
T  7097553 attggttgaggctcgttgatttcttttggtgcccataattggttgg 7097508  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 437 - 525
Target Start/End: Original strand, 29823415 - 29823503
Alignment:
Q  437 tttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacctttg 525  Q
    |||||||||||||||| |||||||| |||||   ||||||||| |||| | || |||| |||||||||| || ||||||||||||||||    
T  29823415 tttgtttgggagttgacccttttccgtatttgaaaatcagataatgataatgacttacagttggaggctccgagatatgtggacctttg 29823503  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 29822994 - 29823103
Alignment:
Q  118 cataaattcatagttgtgtggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctttttagtgctcata 217  Q
    |||| |||||| || | |||||||||||||||| ||| ||||| |||||||||  | | |||||| |||||| ||| | |||| ||||| ||||||||||    
T  29822994 catacattcattgtcgcgtggtgcccataattggttgggacccgaagtcttgagcgcccataattggttggggcttattgtttccttttgagtgctcata 29823093  T
Q  218 attgattgag 227  Q
    |||| |||||    
T  29823094 attggttgag 29823103  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 508
Target Start/End: Complemental strand, 7093492 - 7093422
Alignment:
Q  438 ttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcg 508  Q
    ||||||||||||||| |||||||| |||||   ||||||||| |||| | ||||||| |||||||||||||    
T  7093492 ttgtttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggcttcg 7093422  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 508
Target Start/End: Complemental strand, 7097225 - 7097155
Alignment:
Q  438 ttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcg 508  Q
    ||||||||||||||| |||||||| |||||   ||||||||| |||| | ||||||| |||||||||||||    
T  7097225 ttgtttgggagttgacccttttccgtatttgaaaatcagataatgataatgatttacagttggaggcttcg 7097155  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 263
Target Start/End: Complemental strand, 1608640 - 1608447
Alignment:
Q  69 tcattgggagcgatctattttgtggagttagttagcttggtgtcacacacataaattcatagttgtgtggtgcccataattgattgagacccaaagtctt 168  Q
    |||||| ||| | ||||| ||||||||||| | |||  |||||| ||  |||| |||||| || | |||||||||||||||| ||| ||||| |||||||    
T  1608640 tcattgtgagtggtctatcttgtggagttaataagca-ggtgtcgcatgcatacattcatggtcgcgtggtgcccataattggttgggaccctaagtctt 1608542  T
Q  169 gattgtcgataattagttgggacttgtcgttttctttttagtgctcataattgattgagagacattgttttcttttagtgtccatcattggttgg 263  Q
    || || | |||||| |||||| ||| | |||| ||||| |||||||||||||| |||||   | ||| |||||||| ||| |||| |||||||||    
T  1608541 gagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctctttgatttcttttggtgcccataattggttgg 1608447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 263
Target Start/End: Original strand, 2188174 - 2188367
Alignment:
Q  69 tcattgggagcgatctattttgtggagttagttagcttggtgtcacacacataaattcatagttgtgtggtgcccataattgattgagacccaaagtctt 168  Q
    |||||| ||| | ||||||||||||||||| | |||  |||||| ||  |||| |||||| || | ||||||| |||||||| ||| ||||| |||||||    
T  2188174 tcattgtgagtggtctattttgtggagttaataagca-ggtgtcgcatgcatacattcattgtcgcgtggtgctcataattggttgggacccgaagtctt 2188272  T
Q  169 gattgtcgataattagttgggacttgtcgttttctttttagtgctcataattgattgagagacattgttttcttttagtgtccatcattggttgg 263  Q
    || || | |||||| |||||| ||| | |||| ||||| |||||||||||||| |||||   | |||| ||||||| ||| |||| |||||||||    
T  2188273 gagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtcttcttttggtgcccataattggttgg 2188367  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 525
Target Start/End: Complemental strand, 19632260 - 19632172
Alignment:
Q  437 tttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacctttg 525  Q
    |||||||||||||||| | |||||| |||||   ||||||||| |||| | || |||| |||||||||| || ||||||||||||||||    
T  19632260 tttgtttgggagttgacctttttccgtatttgaaaatcagataatgataatgacttacagttggaggctccgagatatgtggacctttg 19632172  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 19632730 - 19632574
Alignment:
Q  69 tcattgggagcgatctattttgtggagttagttagcttggtgtcacacacataaattcatagttgtgtggtgcccataattgattgagacccaaagtctt 168  Q
    |||||| ||| | ||||||||||||||||| | |||  |||||| ||  |||| |||||  || | ||||||| |||||||| ||| ||||| |||||||    
T  19632730 tcattgtgagtggtctattttgtggagttaataagca-ggtgtcgcatgcatacattcagtgtcgcgtggtgctcataattggttgggacccgaagtctt 19632632  T
Q  169 gattgtcgataattagttgggacttgtcgttttctttttagtgctcataattgattgag 227  Q
    || || | |||||| |||||| ||| | |||| ||||| |||||||||||||| |||||    
T  19632631 gagtgcc-ataattggttggggcttattgtttccttttgagtgctcataattggttgag 19632574  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 525
Target Start/End: Original strand, 2188646 - 2188734
Alignment:
Q  437 tttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacctttg 525  Q
    |||||||||||| | |  ||||||| |||||   ||||||||| |||| | || |||| |||||||||| || ||||||||||||||||    
T  2188646 tttgtttgggagctaacacttttccgtatttgaaaatcagataatgataatgacttacagttggaggctccgagatatgtggacctttg 2188734  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 118 - 263
Target Start/End: Original strand, 8377904 - 8378049
Alignment:
Q  118 cataaattcatagttgtgtggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctttttagtgctcata 217  Q
    |||| |||||| |||| |||||||||||||||| ||| ||||| ||||||||| || | |||||| |||||| ||| | |||| ||| | ||||||||||    
T  8377904 catacattcattgttgcgtggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggggcttattgtttccttgtgagtgctcata 8378003  T
Q  218 attgattgagagacattgttttcttttagtgtccatcattggttgg 263  Q
    |||| |||||   | ||| |||||||| ||| |||| |||||||||    
T  8378004 attggttgaggcccgttgatttcttttggtgcccataattggttgg 8378049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 437 - 525
Target Start/End: Complemental strand, 37626747 - 37626659
Alignment:
Q  437 tttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacctttg 525  Q
    |||||||||||||||| |||||||| |||||   ||||||||| |||| | || ||||||||||||||| || ||||||||||||||||    
T  37626747 tttgtttgggagttgacccttttccgtatttgaaaatcagataatgataatgacttacggttggaggctccgagatatgtggacctttg 37626659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 525
Target Start/End: Complemental strand, 37803287 - 37803199
Alignment:
Q  437 tttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacctttg 525  Q
    ||||||||| |||||| |||||||| |||||   ||||||||| |||| | || ||||||||||||||| || ||||||| ||||||||    
T  37803287 tttgtttggaagttgacccttttccgtatttgaaaatcagataatgataatgacttacggttggaggctccgagatatgtagacctttg 37803199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 37627152 - 37627061
Alignment:
Q  136 tggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctttttagtgctcataattgattgag 227  Q
    ||||||||||||||| ||| || || ||||||||| || | |||||| |||| | ||| | |||| ||||| |||||||||||||| |||||    
T  37627152 tggtgcccataattggttgggatccgaagtcttgagtgcccataattggttgaggcttattgtttccttttgagtgctcataattggttgag 37627061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 37803674 - 37803603
Alignment:
Q  118 cataaattcatagttgtgtggtgcccataattgattgagacccaaagtcttgattgtcgataattagttggg 189  Q
    |||| |||||| || |||||||||||||||||| ||| ||||| ||||||||| || | |||||| ||||||    
T  37803674 catacattcattgtcgtgtggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggg 37803603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 14276073 - 14275927
Alignment:
Q  118 cataaattcatagttgtgtggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctt--tttagtgctca 215  Q
    |||| |||||| || | |||||||| ||||||| ||| ||||  ||||||||| || | |||||| |||||| ||| |||||| |||  || ||||||||    
T  14276073 catacattcattgtcgcgtggtgcctataattggttgggacctgaagtcttgagtgcccataattggttggggcttatcgttt-cttggttgagtgctca 14275975  T
Q  216 taattgattgagagacattgttttcttttagtgtccatcattggttgg 263  Q
    |||||| |||||   | |||||||||||| ||| |||| ||| |||||    
T  14275974 taattggttgaggctcgttgttttcttttggtgcccataattagttgg 14275927  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 69 - 263
Target Start/End: Complemental strand, 41313761 - 41313567
Alignment:
Q  69 tcattgggagcgatctattttgtggagttagttagcttggtgtcacacacataaattcatagttgtgtggtgcccataattgattgagacccaaagtctt 168  Q
    |||||| ||| | ||||||||||||||||| | |||  |||||| ||  |||| |||||| || | ||||||| |||||||| ||| ||||| |||||||    
T  41313761 tcattgtgagtggtctattttgtggagttaataagca-ggtgtcgcatgcatacattcattgtcgcgtggtgctcataattggttgggacccgaagtctt 41313663  T
Q  169 gattgtcgataattagttgggacttgtcgttttctttttagtgctcataattgattgagagacattgt-tttcttttagtgtccatcattggttgg 263  Q
    || || | |||||| |||||| ||| | |||| ||||| |||||||||||||| |||||   | |||| |||||||| ||| |||| |||||||||    
T  41313662 gagtgcccataattggttggggcttattgtttccttttgagtgctcataattggttgaggctcgttgtctttcttttggtgcccataattggttgg 41313567  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 525
Target Start/End: Complemental strand, 41313287 - 41313199
Alignment:
Q  437 tttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacctttg 525  Q
    |||||||||||||||| |||||||| |||||   ||||||||| | || | || |||| |||||||||| || ||||||||||||||||    
T  41313287 tttgtttgggagttgacccttttccgtatttgaaaatcagataataataatgacttacagttggaggctccgagatatgtggacctttg 41313199  T

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Target: scaffold0070 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 58731 - 58585
Alignment:
Q  118 cataaattcatagttgtgtggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttcttttt-agtgctcat 216  Q
    |||| |||||| || | |||||||||||||||| ||| ||||| ||||||||| || | |||||| |||||| ||| | |||| |||||| |||||||||    
T  58731 catacattcattgtcgcgtggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggggcttattgtttcctttttgagtgctcat 58632  T
Q  217 aattgattgagagacattgttttcttttagtgtccatcattggttgg 263  Q
    ||||| |||||   | |||| ||||||| ||| |||| |||||||||    
T  58631 aattggttgaggctcgttgtcttcttttggtgcccataattggttgg 58585  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 437 - 525
Target Start/End: Original strand, 19216293 - 19216381
Alignment:
Q  437 tttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacctttg 525  Q
    |||||||||||||||| |||||||| |||||   ||||||||| |||| | || |||| |||||||||| || ||||||||||||||||    
T  19216293 tttgtttgggagttgacccttttccgtatttgaaaatcagataatgataatgacttacagttggaggctccgagatatgtggacctttg 19216381  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 263
Target Start/End: Original strand, 19215886 - 19216013
Alignment:
Q  136 tggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctttttagtgctcataattgattgagagacattg 235  Q
    ||||||||||||||| ||| ||||| ||||||||| || | |||||| |||||| ||| | |||| ||||| |||||||||||||| || ||   | |||    
T  19215886 tggtgcccataattggttgggacccgaagtcttgagtgcccataattggttggggcttattgtttccttttgagtgctcataattggtttaggctcgttg 19215985  T
Q  236 ttttcttttagtgtccatcattggttgg 263  Q
    | ||||||| ||| |||| |||||||||    
T  19215986 tcttcttttggtgcccataattggttgg 19216013  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 19589612 - 19589736
Alignment:
Q  118 cataaattcatagttgtgtggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctttttagtgctcata 217  Q
    |||| |||||| || ||||| |||||||||||| |||  |||| ||||||||| || |  ||||| ||||||  |||||||||| |||| |||| |||||    
T  19589612 catatattcatcgtcgtgtgctgcccataattggttggaaccctaagtcttgagtgcccgtaattggttggggtttgtcgttttgttttgagtgttcata 19589711  T
Q  218 attgattgagagacattgttttctt 242  Q
    |||| ||||||  | ||||||||||    
T  19589712 attggttgagactcgttgttttctt 19589736  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 525
Target Start/End: Original strand, 19591925 - 19592005
Alignment:
Q  445 ggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacctttg 525  Q
    ||||||||  ||||||  ||||||||||||| ||| ||||||||| ||||||||| || || || |||||||| |||||||    
T  19591925 ggagttgactcttttcagtattttggaatcaaataatgatcacgacttacggttgaagactccgagatatgtgaacctttg 19592005  T

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Target: scaffold2006 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold2006
Description:

Target: scaffold2006; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 525
Target Start/End: Complemental strand, 1090 - 1002
Alignment:
Q  437 tttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacctttg 525  Q
    ||||||||| |||||| |||||||| |||||   ||||||||| |||| | || ||||||||||||||| || ||||||| ||||||||    
T  1090 tttgtttggtagttgacccttttccgtatttgaaaatcagataatgataatgacttacggttggaggctccgagatatgttgacctttg 1002  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 525
Target Start/End: Original strand, 639416 - 639503
Alignment:
Q  438 ttgtttgggagttgatccttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacctttg 525  Q
    |||||||||||||   | |||||| |||||   |||||||||  ||| |||| |||||||| ||||||||| ||||||||||||||||    
T  639416 ttgtttgggagttaccctttttccgtatttgaaaatcagataaagataacgacttacggtttgaggcttcgagatatgtggacctttg 639503  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 227
Target Start/End: Complemental strand, 11991874 - 11991782
Alignment:
Q  136 tggtgcccataattgattgagacccaaagtcttgattgtcgataattagttgggacttgtcgttttctt--tttagtgctcataattgattgag 227  Q
    ||||||||||||||| ||| ||||||||||||||| || | |||||| |||| | ||| ||| ||||||  || |||||||||||||| |||||    
T  11991874 tggtgcccataattggttgggacccaaagtcttgagtgcccataattggttgaggcttatcg-tttcttggttgagtgctcataattggttgag 11991782  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 522
Target Start/End: Complemental strand, 11991456 - 11991371
Alignment:
Q  438 ttgtttgggagttgatcc-ttttccatattttggaatcagatattgatcacgatttacggttggaggcttcgcgatatgtggacct 522  Q
    ||||||||||||||| || |||||| ||||||  ||| ||||| ||||  |||||||| |||||| |||||| || ||||||||||    
T  11991456 ttgtttgggagttgaccctttttccgtattttaaaattagataatgatatcgatttacagttggaagcttcgagagatgtggacct 11991371  T

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