View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_17 (Length: 498)
Name: NF19631_low_17
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Original strand, 46680905 - 46681376
Alignment:
| Q |
8 |
ctaaaggcaacaagaatactaggagatcaatagcacagctcaagtgggccacaaaatttatgttgcaataagcattgagtacaaatttgtttatcaaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46680905 |
ctaaaggcaacaagaatactaggagatcaatagcacagctcaagtgggccacaaaatttatgttgcaataagcattgagtacaaatttgtttatcaaaaa |
46681004 |
T |
|
| Q |
108 |
attaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaataataatagacttcaaactaatatttgcattaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |
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| T |
46681005 |
attaaactacacgccttaaaatattaaaataattctcgatctgattaaagtaacttaaaatcatcaata---atagacttaaaactaatatttgcactaa |
46681101 |
T |
|
| Q |
208 |
aattcacctttcaatataaatagtcatgctatcatttagaaaccaacctccctttcaacatggtgttatgctattacatatagtttcatgctgctacctt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46681102 |
aattcacctttcaatataaatagtcatgctatcatttagaaaccaacctccctttcaatatggtgttatgctattacatatagtttcatgctgctacctt |
46681201 |
T |
|
| Q |
308 |
ttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatctaatttaatattttctcaaatcaaacta |
407 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46681202 |
ttctttactttcctgctaatacgtatagtttgaaattcatacattcaaaagggttccctgcttcatctaatctaatttaatattttctcaaatcaaacta |
46681301 |
T |
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| Q |
408 |
cctccaaacaaacgatacaaactagctatctactaacagtaactttgaattgcaattataacacacattcatata |
482 |
Q |
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| T |
46681302 |
cctccaaacaaacgatacaaactagctatctactaacagtaactttgaattgtaattataacacacattcatata |
46681376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 282 - 441
Target Start/End: Original strand, 46696389 - 46696548
Alignment:
| Q |
282 |
tacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatcta |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
46696389 |
tacatatagtttcatgctgctaccttttctttactttcctgctactaagtatagtttgaaattcatacattcagaagggttccccgcttcatctaatcta |
46696488 |
T |
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| Q |
382 |
atttaatattttctcaaatcaaactacctccaaacaaacgatacaaactagctatctact |
441 |
Q |
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| T |
46696489 |
atttaatattttctcaaatcaaactacctccaaacaaacgatacaagctagctatctact |
46696548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 46696295 - 46696357
Alignment:
| Q |
219 |
caatataaatagtcatgctatcatttagaaaccaacctccctttcaacatggtgttatgctat |
281 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46696295 |
caatataaattgtcacgctatcatttagaaaccaacctccctttcaatatggtgttatgctat |
46696357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 20256380 - 20256457
Alignment:
| Q |
100 |
atcaaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaataa |
177 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||||||| | | | ||| || |||||||||||||||||||| |
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| T |
20256380 |
atcaaaaaattaaactacataccttaaaaaattaaaataattatttacgcgatctaactaacttaaaatcatcaataa |
20256457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 438
Target Start/End: Complemental strand, 29533362 - 29533206
Alignment:
| Q |
282 |
tacatatagtttcatgctgctaccttttctttactttcctgctaatacttatagtttgaaattcatacattcaaaagggttccctgcttcatctaatcta |
381 |
Q |
| |
|
||||||| |||| |||| || |||||| ||||| || ||||| ||| ||||||||| |||| | | |||||||||||| ||| |||||||| ||||| |
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| T |
29533362 |
tacatatggttttttgctactcccttttaattactatcatgctactacatatagtttgcaatttaca-attcaaaagggtacccaacttcatctgatcta |
29533264 |
T |
|
| Q |
382 |
atttaatatttt-ctcaaatcaaactacctccaaacaaacgatacaaactagctatct |
438 |
Q |
| |
|
|||||| |||| || ||| |||||| |||||||||||||||||| ||||| |||| |
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| T |
29533263 |
gtttaatttttttcttgaattgaactacttccaaacaaacgatacaagctagccatct |
29533206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 251
Target Start/End: Original strand, 15667110 - 15667255
Alignment:
| Q |
100 |
atcaaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaataataatagacttcaaactaatatt |
199 |
Q |
| |
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||||||||| ||||||||| |||||||| |||||||||| | | ||| ||| || |||||| ||||||||||||||| ||| |||||||| | |
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| T |
15667110 |
atcaaaaaagtaaactacataccttaaaaaattaaaataagtttttatgcgatccaactaacttgaaatcatcaataata----actcagaactaatact |
15667205 |
T |
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| Q |
200 |
tgcattaaaattcacctttcaatataaatagtcatgctatcatttagaaacc |
251 |
Q |
| |
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|||| | |||| |||||| ||||||| |||||||||||||||||||||| |
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| T |
15667206 |
tgcact--aatttccctttcgatataaaccgtcatgctatcatttagaaacc |
15667255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 30703988 - 30703938
Alignment:
| Q |
103 |
aaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgatt |
153 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| |||||||||||| |
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| T |
30703988 |
aaaaaattaaactacacatgttaaaaaattaaaataatactcaatgtgatt |
30703938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 601950 - 601902
Alignment:
| Q |
105 |
aaaattaaactacacgccttaaaatattaaaataattctcaatgtgatt |
153 |
Q |
| |
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||||||||| |||||||| ||||| |||||||||||||||||| |||| |
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| T |
601950 |
aaaattaaaatacacgccctaaaaatttaaaataattctcaatgcgatt |
601902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 28313390 - 28313354
Alignment:
| Q |
215 |
ctttcaatataaatagtcatgctatcatttagaaacc |
251 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
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|
| T |
28313390 |
ctttcaatataaaccgtcatgctatcatttagaaacc |
28313354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 3708217 - 3708172
Alignment:
| Q |
134 |
aaataattctcaatgtgattaaagtaacttaaaatcatcaataata |
179 |
Q |
| |
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| T |
3708217 |
aaataattcacaatgtgattttagtaacttaatatcatcaataata |
3708172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 12055156 - 12055193
Alignment:
| Q |
214 |
cctttcaatataaatagtcatgctatcatttagaaacc |
251 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |
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|
| T |
12055156 |
cctttcaatataaaccgtcatgctatcatttagaaacc |
12055193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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