View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_19 (Length: 485)
Name: NF19631_low_19
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 100 - 358
Target Start/End: Complemental strand, 16698979 - 16698725
Alignment:
| Q |
100 |
taatttaagttaattctaaagaaatagaatatggagccaagggatcaacgtactctggttaatctatttgctgaagcaatcaaaggcccgttactttcat |
199 |
Q |
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| T |
16698979 |
taattgaagttaattctaaagaaatagaatatggagccaagggatcaac----tctggttaatctttttgctgaagcaatcaaaggcccgttactttcat |
16698884 |
T |
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| Q |
200 |
cacagttaattccaaatatgaattctagatttgcacgttcattatttgtcttaagttgggacctaaggcaatcagattcacgtcttggtggaagaaaata |
299 |
Q |
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| T |
16698883 |
cagagtcaattccaaatctgaactctagatttgcactttcattatttgtcttcagttgggacttaaggcaatcagattcatgtcgtggtggaagaaaata |
16698784 |
T |
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| Q |
300 |
ttgcaggttatttatttgaaattgctaaaagcatgtgttctttgccgtgttgaaagaaa |
358 |
Q |
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| T |
16698783 |
ttgcaggttatttatttgaaattgctaaaagcatgtgttctttgccgtgatgaaagaaa |
16698725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 152 - 321
Target Start/End: Complemental strand, 38228486 - 38228315
Alignment:
| Q |
152 |
ctctggttaatctatttgctgaagcaatcaaaggcccgttactttcatca--cagttaattccaaatatgaattctagatttgcacgttcattatttgtc |
249 |
Q |
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| T |
38228486 |
ctctggttaatctgttcgccgaagcaatcaaaggcccgttgctttcatcagtcagccaagtccaaatcggagctctagatttgctctttcattatttatc |
38228387 |
T |
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| Q |
250 |
ttaagttgggacctaaggcaatcagattcacgtcttggtggaagaaaatattgcaggttatttatttgaaat |
321 |
Q |
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| T |
38228386 |
ttcagttgggacttcaggcaatcagattcaagtcttagtggaagaaaatattgcagattatttatttgaaat |
38228315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 365 - 468
Target Start/End: Complemental strand, 38228204 - 38228101
Alignment:
| Q |
365 |
gcctcattatctgaataaattttacattattctgatttagcttggcttatcttttctcattaaaagcatgtgagtgcataaattaattttcaccttactg |
464 |
Q |
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||||||| |||| |||||| |||||| ||||||| ||||||||||||| |||||| |||||||||| ||||| ||||||| |||| ||| ||||||||| |
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| T |
38228204 |
gcctcatgatcttaataaagtttacactattctggtttagcttggcttctctttttccattaaaagcttgtgaatgcataacttaactttgaccttactg |
38228105 |
T |
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| Q |
465 |
ttat |
468 |
Q |
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|||| |
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| T |
38228104 |
ttat |
38228101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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