View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_low_24 (Length: 462)

Name: NF19631_low_24
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_low_24
NF19631_low_24
[»] chr8 (6 HSPs)
chr8 (232-442)||(9066814-9067025)
chr8 (150-211)||(9069111-9069172)
chr8 (13-108)||(9069214-9069310)
chr8 (262-327)||(16843311-16843376)
chr8 (262-326)||(27289851-27289915)
chr8 (264-328)||(31024494-31024558)
[»] chr5 (1 HSPs)
chr5 (341-404)||(3560727-3560790)
[»] chr6 (1 HSPs)
chr6 (262-328)||(31169171-31169237)
[»] chr2 (1 HSPs)
chr2 (262-328)||(28646212-28646278)
[»] chr4 (1 HSPs)
chr4 (261-327)||(27991132-27991197)
[»] chr3 (1 HSPs)
chr3 (262-328)||(32135157-32135223)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 232 - 442
Target Start/End: Complemental strand, 9067025 - 9066814
Alignment:
Q  232 aataatataatattctcataaaaatttgaatataaccaataaagtagctacttttgggatcaaatttgcgacataaactaaaagtctacaactctcccct 331  Q
    ||||| |||||||||||||| |||| ||||||| ||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||| ||    
T  9067025 aataacataatattctcatagaaatctgaatattaccaataaagtagctacctttgggatcaaatttataacataaactaaaagtctacaactctccact 9066926  T
Q  332 aaaccattgatcgagttaggcacaaaaatgtttaaaagaaattgaccaacataaacatatttaaagtgaaaaaatt-ggagtctaataaggtctaaaaat 430  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||||||||| |||||| |    
T  9066925 aaaccactgaccgagttaggcacaaaaatgtttaaaagaaattgaccaacatgaacatatttaaagcgaaaaaattcgaagtctaataaggcctaaaatt 9066826  T
Q  431 tttgggggccta 442  Q
    ||||||||||||    
T  9066825 tttgggggccta 9066814  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 9069172 - 9069111
Alignment:
Q  150 ttacaattttgatatgtgatcttggaccggtccaatgtaattataggtctacttcgaattta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9069172 ttacaattttgatatgtgatcttggaccggtccaatgtaattataggtctacttcgaattta 9069111  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 9069310 - 9069214
Alignment:
Q  13 aaaattatactcttacttcacctgtcaactaataagaacggtattcatc-nnnnnnntactaataagaatggtaatgataaagtagaacacatagac 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||    
T  9069310 aaaatgatactcttacttcacctgtcaactaataagaacggtattcgtcaaaaaaaatactaataagaatggtaatgataaagtagaacacatagac 9069214  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 16843376 - 16843311
Alignment:
Q  262 tataaccaataaagtagctacttttgggatcaaatttgcgacataaactaaaagtctacaactctc 327  Q
    ||||||||||||| |||||||||||| ||||||| |||| | || |||||||||||||||| ||||    
T  16843376 tataaccaataaaatagctacttttgagatcaaacttgcaatatgaactaaaagtctacaattctc 16843311  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 27289915 - 27289851
Alignment:
Q  262 tataaccaataaagtagctacttttgggatcaaatttgcgacataaactaaaagtctacaactct 326  Q
    |||||||||||||||| |||| |||| ||||||| |||| |||| ||||||||||||| ||||||    
T  27289915 tataaccaataaagtatctacctttgagatcaaacttgcaacatgaactaaaagtctataactct 27289851  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 31024494 - 31024558
Alignment:
Q  264 taaccaataaagtagctacttttgggatcaaatttgcgacataaactaaaagtctacaactctcc 328  Q
    ||||||||||| || ||| ||||||||||||| |||| |||| ||||| |||||||||| |||||    
T  31024494 taaccaataaaataactatttttgggatcaaacttgcaacatgaactataagtctacaattctcc 31024558  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 3560727 - 3560790
Alignment:
Q  341 atcgagttaggcacaaaaatgtttaaaagaaattgaccaacataaacatatttaaagtgaaaaa 404  Q
    |||||| |||||| ||||||||||||||||| ||||| | || ||| |||||||||||||||||    
T  3560727 atcgagctaggcataaaaatgtttaaaagaatttgactaccaaaaatatatttaaagtgaaaaa 3560790  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 31169237 - 31169171
Alignment:
Q  262 tataaccaataaagtagctacttttgggatcaaatttgcgacataaactaaaagtctacaactctcc 328  Q
    ||||| ||||||||||| ||| | |||||||||| |||| |||| |||||||| |||||||||||||    
T  31169237 tataatcaataaagtagttacctctgggatcaaacttgcaacatgaactaaaaatctacaactctcc 31169171  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 28646278 - 28646212
Alignment:
Q  262 tataaccaataaagtagctacttttgggatcaaatttgcgacataaactaaaagtctacaactctcc 328  Q
    ||||||||||||| |||||||||||  |||||||  ||| |||||||  ||||||||||||||||||    
T  28646278 tataaccaataaaatagctacttttaagatcaaacatgcaacataaatcaaaagtctacaactctcc 28646212  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 27991132 - 27991197
Alignment:
Q  261 atataaccaataaagtagctacttttgggatcaaatttgcgacataaactaaaagtctacaactctc 327  Q
    |||||||||||||||||| ||| |||| |||||||||||| ||||||| ||||| | ||||| ||||    
T  27991132 atataaccaataaagtagttac-tttgtgatcaaatttgctacataaattaaaattttacaattctc 27991197  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 32135223 - 32135157
Alignment:
Q  262 tataaccaataaagtagctacttttgggatcaaatttgcgacataaactaaaagtctacaactctcc 328  Q
    ||||||||||||| ||| |   |||||| ||||| |||| |||||||||| ||||||||||||||||    
T  32135223 tataaccaataaaatagttttatttggggtcaaacttgcaacataaactacaagtctacaactctcc 32135157  T

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