View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_27 (Length: 444)
Name: NF19631_low_27
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 89 - 427
Target Start/End: Complemental strand, 3438397 - 3438059
Alignment:
| Q |
89 |
gtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaagcacatataactaaa |
188 |
Q |
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| T |
3438397 |
gtaataagtaaatgaatataacaatgtcaatatgtatcggaacaggccttatatgaagtgtcggtgctacataacacatgattaatcacatataactaaa |
3438298 |
T |
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| Q |
189 |
gtctcaaaccttaaaacttgagcaatgatatcatcccagtctatgacatgatcctcagtgatgacccattttgtatttggtggttcgacatcaggaaaat |
288 |
Q |
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| T |
3438297 |
gtctcaaaccttaaaacttgagcaatgatatcatcccagtctatgacatgatcctcagtgatgacccattttgtatttggtggttcgacatcaggaaaat |
3438198 |
T |
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| Q |
289 |
caacaagataatcagaaagctttttgtttatctttccccttattgttctagcactatactccaacttctcagaagcaacccaaagaggcacaacgttgtg |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3438197 |
caacaagataatcagaaagctttttgtttatctttccccttattgttctagcactatactccaacttctcagaagcaacccaaagaggcacaacgttgtg |
3438098 |
T |
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| Q |
389 |
agcatcaacttcatgaacagtaaccaaatcacttactct |
427 |
Q |
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| T |
3438097 |
agcatcaacttcatgaacagtaaccaaatcacttactct |
3438059 |
T |
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