View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_28 (Length: 440)
Name: NF19631_low_28
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 44155439 - 44155849
Alignment:
| Q |
13 |
aatattggtatgaagaatagtatttgcaagtacgtgaaagttgcggttgatggagctccatatctaagaaaagtggatcttgaagtttatgaatgttatg |
112 |
Q |
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| T |
44155439 |
aatattggtatgaagaatagtatttgcaagtacgtgaaagttgcggttgatggagctccatatctaagaaaagtggatcttgaagtttatgaatgttatg |
44155538 |
T |
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| Q |
113 |
acaatcttctcactgcattgaataccatgttttctactaattgcttcactattcgtacgtattcattcatcatcaa-caatgatatattgtgtttgtgtc |
211 |
Q |
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| T |
44155539 |
acaatcttctcactgcattgaataccatgttttctactaattgcttcactattcgtacgtattcattcatcatcaaacaatgatatattgtgtttgtgtc |
44155638 |
T |
|
| Q |
212 |
catgtcatttttatgtttcattaatatatgttgtgtgttatgagagtaatttgctttgtttttgtataccaactgttattaattaattattgcaggtaat |
311 |
Q |
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| T |
44155639 |
catgtcagttttatgtttcattaatatatgttgtgtgttatgagagtaatttgctttgtttttgtataccaactattattaattaattattgcaggtaac |
44155738 |
T |
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| Q |
312 |
gatttgatgaatgagaagaaattcatggattctagaaaaaatacgaatgaatatatggctacctatgaggataaagatggtgactggatgttgcttgggg |
411 |
Q |
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| T |
44155739 |
gatttgatgaatgagaagaaattcatggattctagaaaaaatacgaatgaatatttggctacctatgaggataaagatggtgactggatgttgcttgggg |
44155838 |
T |
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| Q |
412 |
atgtaccctgg |
422 |
Q |
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| T |
44155839 |
atgtaccctgg |
44155849 |
T |
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