View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_29 (Length: 435)
Name: NF19631_low_29
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_29 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 49 - 293
Target Start/End: Original strand, 21477097 - 21477347
Alignment:
| Q |
49 |
gtgcaaaagcaacttatggaagcttaattctgttgatcaatccattgaaggaggtaatttgtgtggattcttgaggttctattttaatgtcatttttcgt |
148 |
Q |
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| T |
21477097 |
gtgcaaaagctacttatggaagcttaattctgttgatcaatccattgaaggaggtaatttgtgtggattcttgaggttctattttaatgtcatttttcgt |
21477196 |
T |
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| Q |
149 |
tttgtggtttatttcttgttaattcttgtgcaattcggtttatcttatgacgcaattgatcatatataatttcgttttgtgcaattttat------ttta |
242 |
Q |
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| T |
21477197 |
tttgtggtttatttcttgttaattcttgtgcaattcggtttatcttatgacgcaattgatcatatataatttcgttttgtgcaattttattgatagttta |
21477296 |
T |
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| Q |
243 |
ctcaattgatttatagcttgtttaggttaagtttataattcttaattagag |
293 |
Q |
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| T |
21477297 |
ctcaattgatttatagcttgtttaggttaagtttataattcttaattagag |
21477347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 294 - 435
Target Start/End: Original strand, 21477373 - 21477514
Alignment:
| Q |
294 |
aattgtgcttcagacgcttgttatgttatggttaatagaactttttgatgcttaatcaataggaaacaaattctctagatgcctgttttcaagtatgata |
393 |
Q |
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| T |
21477373 |
aattgtgcttcagacgcttgttatgttatggttaatagaactttttgatgcttaatcaataggaaacaaattctctagatgcctgttttcaagtatgata |
21477472 |
T |
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| Q |
394 |
ttgggatacaaacggtgtcattttctctccaacatacactgc |
435 |
Q |
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| T |
21477473 |
ttgggatacaaacggtgtcattttctctccaacatacactgc |
21477514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21477020 - 21477060
Alignment:
| Q |
1 |
tgaattagggttaatgtttagacctataaataagacacatc |
41 |
Q |
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| T |
21477020 |
tgaattagggttaatgtttagacctataaataagacacatc |
21477060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 33319860 - 33319788
Alignment:
| Q |
67 |
gaagcttaattctgttgatcaatccattgaaggag-gtaatttgtgtggattcttgaggttctattttaatgt |
138 |
Q |
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| T |
33319860 |
gaagcttaattatgttgatcaatccattgacggagagtaatttgtacggattcttgaggttctattctaatgt |
33319788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 358
Target Start/End: Complemental strand, 33319569 - 33319520
Alignment:
| Q |
309 |
gcttgttatgttatggttaatagaactttttgatgcttaatcaataggaa |
358 |
Q |
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| T |
33319569 |
gcttgttttgttatgattaattgaactttgttatgcttaatcaataggaa |
33319520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 27513862 - 27513917
Alignment:
| Q |
381 |
ttcaagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgc |
435 |
Q |
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| T |
27513862 |
ttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgc |
27513917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 27501368 - 27501316
Alignment:
| Q |
384 |
aagtatgatattgggat-acaaacggtgtcattttctctccaacatacactgc |
435 |
Q |
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| T |
27501368 |
aagtatgatattgggatcacaaaccgtttcatttcctctccaacatatactgc |
27501316 |
T |
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