View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_32 (Length: 425)
Name: NF19631_low_32
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 108 - 415
Target Start/End: Original strand, 24363028 - 24363336
Alignment:
| Q |
108 |
caaacatttaca-tttacttatacgtatgtactacatctttgaatattactagccataagctaaaatttgttataaaacttccaaacacataaggcttca |
206 |
Q |
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| T |
24363028 |
caaacatttacaatttacttatacatacgtactacatctttgaatattactagccataagctaaaatttgttataaaacttccaaacacataaggcttca |
24363127 |
T |
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| Q |
207 |
gcttttgtatgctttctctatactgcatgttatcttgccaaagtttagctctattcttattcaagttgattacctcataagtaagcaagcatgactttag |
306 |
Q |
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| T |
24363128 |
gcttttctatgctttctctatactgcatgttatcttgccaaagtttagctctattcttattcaagttgattacctcataagtaagcaagcatgactttag |
24363227 |
T |
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| Q |
307 |
ttagataagaggggtcctaccaacaacaactttccaatacaaaactatcaataaattaagaaagtgcaaccaccaaagtaacgaactatctaaaggtagt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24363228 |
ttagataagaggggtcctaccaacaacaactttccaatacaaaactatcaataaattaagaaagtgcaaccaccaaagtaacgaactatctaaaggtagt |
24363327 |
T |
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| Q |
407 |
ggccctatg |
415 |
Q |
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||||||||| |
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| T |
24363328 |
ggccctatg |
24363336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 24362940 - 24362969
Alignment:
| Q |
20 |
tgaagttgcttcaaaatgcatctttaatca |
49 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24362940 |
tgaagttgcttcaaaatgcatctttaatca |
24362969 |
T |
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