View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_34 (Length: 421)
Name: NF19631_low_34
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 46296835 - 46296446
Alignment:
| Q |
13 |
aatataaagggttatgcaagtgctaacaatgtttgaaaattaatttaactttatccaaagaaaacaaagaagtgaagaaaaatgtaattcttttgtcggt |
112 |
Q |
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| T |
46296835 |
aatataaagggttatgcaagtgctaacaatttttgaaaattaatttaactttatccaaagaaaacaaagaagtgaagaaaaatgtaattcttttgtcggt |
46296736 |
T |
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| Q |
113 |
aaattgtgaacaagaccgaagtatctctccaagaacaactgtacaagcttaaataaggtggatcatgaatatgaatatgcaagaaatagcaagagctgct |
212 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46296735 |
aaattgtgaacaagaccgaactatctctccaagaacaactgtacaagcttaaataaggtggatcatgaatatgaatatgcaagaaatagcaagagctgct |
46296636 |
T |
|
| Q |
213 |
gaagctgcagctttccccagttgggcnnnnnnncaggttcgcattttgcattgtataaagctgtcacgctacgtccttttcctcttgtattacaactgtc |
312 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
46296635 |
gaagctgcagctttccccagttgggcaaaaaaacaggttcgcattttgcattgtataaagctgccacgctacgtcctttttctcttgtattacaactgtc |
46296536 |
T |
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| Q |
313 |
ttctcttgatttggttattttcattttatctattttgatttcacgacttctattgttattctttcttgtattggagaaatttacgataca |
402 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46296535 |
ttctcttgatttggtgattttcattttatctattttgatttcacgacttctattgttattctttcttgtattggagaaatttacgataca |
46296446 |
T |
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