View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_36 (Length: 406)
Name: NF19631_low_36
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 41 - 256
Target Start/End: Complemental strand, 27715207 - 27714992
Alignment:
| Q |
41 |
gtacaagaattggaagacggaagcaaaatccatgaaatcttttataaagtaacaaaatttatcataaaaggggaaagtacaagaattggaggactagatc |
140 |
Q |
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| T |
27715207 |
gtacaagaattggaagacggaagcaaaatccatgaaatcttttataaagtaacaagatttatcaaaaaaaggaaaagtacaagaattggaggactagatc |
27715108 |
T |
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| Q |
141 |
aaaatctatgaaaaccatagtttaccttaaaaggtaggggaaaaagtagataagttacttccaaagaaagagatcacctccaattagaaaagatcaccaa |
240 |
Q |
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| T |
27715107 |
aaaatctatgaaaaccatagtttaccttaaaaggtaggggaaaaagtagataagttacttccaaagaaagagatcacctccacttagaaaagatcaccaa |
27715008 |
T |
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| Q |
241 |
catatgtttataagaa |
256 |
Q |
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| T |
27715007 |
catatgtttataagaa |
27714992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 276 - 393
Target Start/End: Complemental strand, 27714814 - 27714703
Alignment:
| Q |
276 |
ttcaacatatcatatcaattccatcattaaattgctattaggaaatgcatataaaatattataaacttcttactattttcatatattctaaaaattgagg |
375 |
Q |
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| T |
27714814 |
ttcaacatatcatatcaattccatcattaaatt------aggaaatgcatataaaatattataaacttcttacttttttcatatatactaaaaattgagg |
27714721 |
T |
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| Q |
376 |
ttgaaagtgatacatact |
393 |
Q |
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| T |
27714720 |
ttgaaagtgatacatact |
27714703 |
T |
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