View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_38 (Length: 401)
Name: NF19631_low_38
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 178 - 386
Target Start/End: Original strand, 4279522 - 4279730
Alignment:
| Q |
178 |
caataactttctaccagcacacaagtcatactaaaattcaaacattatgcccagtgcccggatatttagtactaatttggaccaaaatagtaacggcaag |
277 |
Q |
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| T |
4279522 |
caataactttctaccagcacacaagtcatactaaaattcaaacattatgcccagtgcccggatgtttagtactaatttggaccaaaatagtaacggcaag |
4279621 |
T |
|
| Q |
278 |
cattcttacaaatgggttgcctgcctgccaaaacaacatcccacccccctgaatatgaacaagtcattgatagtaacaacacagtaaaagcagaatatag |
377 |
Q |
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| T |
4279622 |
cattcttacaaatgggttgcctgcctgccaaaacaacatcccacccccctgaatatgaacaagtcattgatagtaacaacacagtaaaagcagaatatag |
4279721 |
T |
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| Q |
378 |
agttgtata |
386 |
Q |
| |
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||||||||| |
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| T |
4279722 |
agttgtata |
4279730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 4279343 - 4279470
Alignment:
| Q |
1 |
cagactggtaaagatatccatgacagatcaaatgtcattagctattccacaaaacaaatgctaatcgagcagtacattttaaatatatccatgtatgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4279343 |
cagactggtaaagatatccatgacagatcaaatgtcattagctattccacaaaacaaatgctaatcgagcagtacattttaaatatatccatgtatgatg |
4279442 |
T |
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| Q |
101 |
tagcttgtttgagtaatcatttatatat |
128 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4279443 |
tagcttgtttgagtaatcatttatatat |
4279470 |
T |
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