View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_39 (Length: 398)
Name: NF19631_low_39
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 22990303 - 22989935
Alignment:
| Q |
19 |
atattatacttgttgcctatatgagttatgttgatgcatcattgccgcccaagcttccactagattatgttcagtctactcttgaatattcagattcaga |
118 |
Q |
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| T |
22990303 |
atattatacttgttgcctatatgagttatgttgatgcatccttgccacccgagcttcctccagattatgttcagtctactcttgaatattcagattcaga |
22990204 |
T |
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| Q |
119 |
tatcatggagggggagtcgcgaatctcacttaactgtcccataggattgacacgaatcaagactcctgttaaagggcgcacatgcaaacacttccagtgt |
218 |
Q |
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| T |
22990203 |
tatcatggagggggagtcgcgaatctcacttaactgtcccataggattgacacgaatcaagactcctgttaaagggcgcacatgcaaacacttccagtgc |
22990104 |
T |
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| Q |
219 |
ttcgattttgacaacttcattgaaataaattgtaacaggccgcactggcgctgtcgccattgcaatgagtatgtctcctatacagatatttgtcttgaca |
318 |
Q |
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| T |
22990103 |
ttcgattttgacaacttcattgaaataaattgttacaggccgctctggcgctgtccccattgcaatgagtatgtctcctatacagatatttgtcttgaca |
22990004 |
T |
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| Q |
319 |
gaaacatggttgagatcctgaaaaaagttggtgagaatgttgtggaagtgattgtccatcatgatgatg |
387 |
Q |
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| T |
22990003 |
gaaacatggttgagatcctgaaaaaagttggtgagaacgttgtggaagtgattgtccatcatgctgatg |
22989935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 332
Target Start/End: Original strand, 2541553 - 2541660
Alignment:
| Q |
225 |
tttgacaacttcattgaaataaattgtaacaggccgcactggcgctgtcgccattgcaatgagtatgtctcctatacagatatttgtcttgacagaaaca |
324 |
Q |
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| T |
2541553 |
tttgacaacttcattaaaataaattttaagaggccatcctggcgctgcccccattgcactcggcctgtctgctatacagatattcgtcttgacagaaaca |
2541652 |
T |
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| Q |
325 |
tggttgag |
332 |
Q |
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|| ||||| |
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| T |
2541653 |
tgattgag |
2541660 |
T |
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