View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_4 (Length: 780)
Name: NF19631_low_4
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 684; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 24 - 780
Target Start/End: Complemental strand, 5401999 - 5401244
Alignment:
| Q |
24 |
ttgatgtatcaactggcaaagaaagttcttatcttagtacacactacgtttaaccgtagctccgtgtttcacaattttccttcattaatttttcttttca |
123 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401999 |
ttgatgtatcaactggcaaagaaagttctta-----gtacacactacgtttaaccgtagctccgtgtttcacaattttccttcattaatttttcttttca |
5401905 |
T |
|
| Q |
124 |
actaacgtgaattcattcattcatg----tacacagatcacaaaattcaaggaagcaccacgaaacgtccaaaatgtagcattgattataggcgtaacag |
219 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401904 |
actaacgtgaattcattcattcatgcatgtacacagatcacaaaattcaaggaagcaccacgaaacgtccaaaatgtagcattgattataggcgtaacag |
5401805 |
T |
|
| Q |
220 |
gaattgtggggaatagtctagcagagatcctacctctaaaagacacaccaggtgggccatggaaggtttatggtgtggttcgccgtccacgaccaatgtg |
319 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
5401804 |
gaattgtgggaaatagtctagcagagatcctacctctaaaagacacaccagttggaccatggaaggtttatggcgtggctcgccgtccacgaccaatgtg |
5401705 |
T |
|
| Q |
320 |
gaatgttgataaccctgttcactatattcagtgtgatgtctccaatcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5401704 |
gaatgttgataaccctgttcactatattcagtgtgatgtctccaatcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattc |
5401605 |
T |
|
| Q |
420 |
tatgtctcgtggaccagcagacccacggaggctcaaaattgtgaggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaa |
519 |
Q |
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| T |
5401604 |
tatgtctcgtggaccagcagacccacggaggctcaaaattgtgaggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaa |
5401505 |
T |
|
| Q |
520 |
atctttcccatgtgtctcttcagactggtgccaagcactatgtaggaccctttgaaatcatcggtaagatcaaacctcacgagtcccccttcacagagaa |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
5401504 |
atctttcccatgtgtctcttcagactggtgccaagcactatgtaggacccttcgaaatcatcggtaagatcaaacctcatgagtcccccttcacagagga |
5401405 |
T |
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| Q |
620 |
cgtgccacgtctcgacacacccaatttctattacacattagaggatatcttgttcgaagaggttagtgcattacacattattctcattagccttttattt |
719 |
Q |
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| T |
5401404 |
tgtgccacgcctcgacacacccaatttctattacacattagaggatatcttgttcgaagaggttagtgcattacacattattctcattagccttttattt |
5401305 |
T |
|
| Q |
720 |
caatggtaatatacaaaataccctaagaagctcacatttgtccacttttttcctttcattt |
780 |
Q |
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| T |
5401304 |
caatggtaatatacaaaataccctaagaagctcacatttgtccacttttttcctttcattt |
5401244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 153 - 690
Target Start/End: Complemental strand, 5395724 - 5395187
Alignment:
| Q |
153 |
cagatcacaaaattcaaggaagcaccacgaaacgtccaaaatgtagcattgattataggcgtaacaggaattgtggggaatagtctagcagagatcctac |
252 |
Q |
| |
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||||| ||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |||| |
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| T |
5395724 |
cagattacagaattcaaggaagcaccaggaagcttccaaaatgtagcattgattataggcgtgacgggaattgtgggaaatagcctagcagagattctac |
5395625 |
T |
|
| Q |
253 |
ctctaaaagacacaccaggtgggccatggaaggtttatggtgtggttcgccgtccacgaccaatgtggaatgttgataaccctgttcactatattcagtg |
352 |
Q |
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| T |
5395624 |
ctctcgacgacacaccaggtggtccatggaaggtttatggtgtggctcgccgtccacaaccaacgtggaacgctgataagtatgttcactacattcaatg |
5395525 |
T |
|
| Q |
353 |
tgatgtctccaatcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggct |
452 |
Q |
| |
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|||||||| | ||||| || || ||||||||||| || || ||||| || ||||| ||||| |||||||||||||||||||||| || || |||||| |
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| T |
5395524 |
cgatgtctctgaccaaaaagacgtcgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcctacagaggct |
5395425 |
T |
|
| Q |
453 |
caaaattgtgaggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgcca |
552 |
Q |
| |
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||||| || || || || ||| | ||||| ||||||||||||| |||||| ||||||||| ||| ||||||| ||||||||| ||||| || || | | |
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| T |
5395424 |
caaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctcaatctttgccatgtgtcccttcaaacaggaacta |
5395325 |
T |
|
| Q |
553 |
agcactatgtaggaccctttgaaatcatcggtaagatcaaacctcacgagtcccccttcacagagaacgtgccacgtctcgacacacccaatttctatta |
652 |
Q |
| |
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||||||| ||||| |||| |||| |||||||||||||| | || |||||||||||||| ||| | |||||||| || | |||||||||||||||||| |
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| T |
5395324 |
agcactacctaggatccttcgaaacgatcggtaagatcaaggcccatgagtcccccttcacggaggatgtgccacgccttgtcacacccaatttctatta |
5395225 |
T |
|
| Q |
653 |
cacattagaggatatcttgttcgaagaggttagtgcat |
690 |
Q |
| |
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|||| |||||||||||||| ||||||||| |||||| |
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| T |
5395224 |
cacacaggaggatatcttgttagaagaggttggtgcat |
5395187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 153 - 683
Target Start/End: Complemental strand, 5391914 - 5391383
Alignment:
| Q |
153 |
cagatcacaaaattcaaggaagcaccacgaaacgtccaaaatgtagcattgattataggcgtaacaggaattgtggggaatagtctagcagagatcctac |
252 |
Q |
| |
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||||| ||| ||||||||||| ||||||||| | |||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||| ||| |
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| T |
5391914 |
cagattacagaattcaaggaatcaccacgaagcttccaaaatgtagcattaattataggcgtgacgggaattgtgggaaatagcctagcagagattttac |
5391815 |
T |
|
| Q |
253 |
ctctaaaagacacaccaggtgggccatggaaggtttatggtgtggttcgccgtccacgaccaat-gtggaatgttgataaccctgttcactatattcagt |
351 |
Q |
| |
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|||| | |||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||| |||||| |||||| |||| |||| ||||| | |
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| T |
5391814 |
ctctcgacgacacaccaggtggtccatggaaggtttatggcgtggctcgccgtccacaaccaaacgtggaacactgataattatgttgactacattcaat |
5391715 |
T |
|
| Q |
352 |
gtgatgtctccaatcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggaccagcagacccacggaggc |
451 |
Q |
| |
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| |||||||| ||||||| || |||||||||||||| || || ||||| || ||||| ||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
5391714 |
gcgatgtctctgatcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggaccagcatgcccacagaggc |
5391615 |
T |
|
| Q |
452 |
tcaaaattgtgaggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgtctcttcagactggtgcc |
551 |
Q |
| |
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|||||| || | || || ||| | ||||| ||||||||||||| |||||| ||||||||| ||| ||||||| |||||||| ||||| || || | |
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| T |
5391614 |
tcaaaactgcaaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtgtcccttcaaacgggaatc |
5391515 |
T |
|
| Q |
552 |
aagcactatgtaggaccctttgaaatcatcggtaagatcaaacctcacgagtcccccttcacagagaacgtgccacgtctcgacacacccaatttctatt |
651 |
Q |
| |
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|||||||| | ||| |||||||||| ||||||||||||| || || |||||||| ||||| ||| | |||||||| || | |||||||||||||||| |
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| T |
5391514 |
aagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgtcacacccaatttctatc |
5391415 |
T |
|
| Q |
652 |
acacattagaggatatcttgttcgaagaggtt |
683 |
Q |
| |
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||||| ||||||||||||| | ||||||||| |
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| T |
5391414 |
acacacaagaggatatcttgctagaagaggtt |
5391383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 571
Target Start/End: Original strand, 47349558 - 47349625
Alignment:
| Q |
504 |
atcccaaatgctccaaatctttcccatgtgtctcttcagactggtgccaagcactatgtaggaccctt |
571 |
Q |
| |
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|||||||||||||| ||||| | ||| ||||||||||| ||||||| || |||||| |||||||||| |
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| T |
47349558 |
atcccaaatgctccgaatctctgccacgtgtctcttcaaactggtgggaaacactatttaggaccctt |
47349625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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