View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_40 (Length: 397)
Name: NF19631_low_40
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 26641977 - 26641592
Alignment:
| Q |
1 |
caaagaatcctaacatttggtcggactcggacctgtcggatccgatgatgagtgcaatggagaacagaatgagtgctttgtaaaagctagccagtgaaca |
100 |
Q |
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| T |
26641977 |
caaagaatcctaacatttggtcggactcggacctgtcggatccgatgatgagtgcaatggagaacagaatgagtgctttgtaaaagctagccagtgaaca |
26641878 |
T |
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| Q |
101 |
agggaagctgctgactgagttgaaaatagacatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaaaatgtt |
200 |
Q |
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| T |
26641877 |
agggaagctgctgactgagttgaaaatagacatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaaaatgtt |
26641778 |
T |
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| Q |
201 |
gtcaagaacgtgacaacagcggatgacgatgctgaatatgttgttgttgattagaattaattttgccttcaaaattgatattaacttgacactgcgactt |
300 |
Q |
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| T |
26641777 |
gtcaagaacgtgacaacagcagatgacgatgctgaatatgttgttgttgattagaattaattttaccttcaaaattgatattaacttgacactgcgactt |
26641678 |
T |
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| Q |
301 |
ttagcttttgacttcaaacttgatttcttttcactcaaatctattattcaactcggttttataaattctcgaactttttgttctgt |
386 |
Q |
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| T |
26641677 |
ttagcttttgacttcaaacttgatttcttttcactcaaatctattattcaactcggttttataaattctcgaactttttgttctgt |
26641592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 27 - 289
Target Start/End: Complemental strand, 26656732 - 26656470
Alignment:
| Q |
27 |
tcggacctgtcggatccgatgatgagtgcaatggagaacagaatgagtgctttgtaaaagctagccagtgaacaagggaagctgctgactgagttgaaaa |
126 |
Q |
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| T |
26656732 |
tcggaccagtcggatccaatgaggagtgcgacggagaacagaatgagcacttttgaaaagctagccactgaacaagggaagctgctgaatgagttgaaaa |
26656633 |
T |
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| Q |
127 |
tagacatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaaaatgttgtcaagaacgtgacaacagcggatga |
226 |
Q |
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|||| || |||||||||||||||||||||||||||| ||||||||||||| || | || | ||||||| |||||| |||||||||||||| |||||| |
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| T |
26656632 |
tagatgtgggacaaatcaaagaattgctgttggaattcaagaagaaaacacctcccacagacgatgaaaattttgtcaggaacgtgacaacaggggatga |
26656533 |
T |
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| Q |
227 |
cgatgctgaatatgttgttgttgattagaattaattttgccttcaaaattgatattaacttga |
289 |
Q |
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| T |
26656532 |
cggtcctgaatttgttgttgtcaattcgaattgattttgcatttaaaattgattttaagttga |
26656470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 26662619 - 26662560
Alignment:
| Q |
75 |
gctttgtaaaagctagccagtgaacaagggaagctgctgactgagttgaaaatagacatg |
134 |
Q |
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| T |
26662619 |
gctttggaaaagctgcccagcgaacaagggaagctgctgactgaattgaaaatggacatg |
26662560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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