View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_low_41 (Length: 397)
Name: NF19631_low_41
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 11116131 - 11115755
Alignment:
| Q |
1 |
ctcaatctccaatttcactaccacataattaaccattatgattaccactctaaccaccaccaaccaccgtttaatcaacttccaattacaagtctgacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || |
|
|
| T |
11116131 |
ctcaatctccaatttcactaccacatgattaaccattatgattaccactctaaccgccaccaactaccgtttaatcaacttcaaattacaagtctgatca |
11116032 |
T |
|
| Q |
101 |
ccattgactatcactttgactatctctgtcaccattccaactatcacctgattacttttctattcaccattgtgatcatcactctggtcaccaccgatca |
200 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||| | ||||||| ||||||||| ||||| ||||| ||||||| |||||| |||||| |
|
|
| T |
11116031 |
ccattgactatcactttgactaccactgtcaccattccaactatcatcagattactattctattcatcattgcgatcaccactctgatcaccatcgatca |
11115932 |
T |
|
| Q |
201 |
ccactctaacggtcgtatgtcaactgccaccacactttattttttgatgatgaagtgtacaaaactaaaacaaaggagtattggtgttttggtca---at |
297 |
Q |
| |
|
||||||| |||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11115931 |
ccactctgacggtcgtatctcaaccgccatcacactttatttcttgatgatgaagtgtacaaaactaaaacaaaggagtattggtgttttggtcaatgat |
11115832 |
T |
|
| Q |
298 |
gttgtattgtgtggaccctgtaaaatccaataactattgcttagattgtatgtatttacaccgaggtcaatgtttgtgtag |
378 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11115831 |
gttgtattgtgtggaccccgtaaaatccaataactattgcttagat----tgtatttacaccgaggtcaatgtttgtgtag |
11115755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University