View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_43 (Length: 391)
Name: NF19631_low_43
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 99 - 375
Target Start/End: Original strand, 47494011 - 47494284
Alignment:
| Q |
99 |
tagtgtaaataatcttttaaactcaaaaagagagttcatgattgattcaccttccattactacagtgaaaataggatgcattgtgttggaaacaatagga |
198 |
Q |
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| T |
47494011 |
tagtgtaaataatcttttaaactcaaaaagagagttcatgattgattcaccttccattactacagtgaaaataggatgcattgtgttggaaataatagga |
47494110 |
T |
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| Q |
199 |
cttggtgattcattgctgaactttttgatgaagtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaagtacaaaaagct |
298 |
Q |
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| T |
47494111 |
cttggtgattcattgctgaactttttgatgaagtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaagtacaaaaagct |
47494210 |
T |
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| Q |
299 |
ccattttttgaatcacttttccttcaaagacataataatcatcttccaattgaaactgtgatagccctggcacatta |
375 |
Q |
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| T |
47494211 |
ccattttttgaatcacttttccttcaaagac---ataatcatcttccaattgaaactgtgatagctctggcacatta |
47494284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 47493896 - 47493989
Alignment:
| Q |
7 |
acatcatcatcatcaatgcaaaagatttagatgctactagtatcaatataacataatcatttgattattaaaaaatattagagtttaatcatta |
100 |
Q |
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| T |
47493896 |
acatcgtcatcatcaatgcaaaagatttagatgctactagtatcaatataacataatcatttgattattaaaaaatatttgagtttaatcatta |
47493989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 24221335 - 24221431
Alignment:
| Q |
223 |
ttgatgaagtaagaaaggaatgaaaagggagtgatgatacccatgttccaatccaatgagctaagtacaaaaagctccattttttgaatcacttttc |
319 |
Q |
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| T |
24221335 |
ttgatgaagtaagaaaggaatgaaaagggagtgataatactcatgttccaatctaatctgctaagaacaaaaagctccattttttgaactacttttc |
24221431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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