View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_low_5 (Length: 714)
Name: NF19631_low_5
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_5 |
 | |
|
| [»] scaffold1453 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 227 - 702
Target Start/End: Complemental strand, 30049882 - 30049383
Alignment:
| Q |
227 |
ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnn-tggaagagaaagggacaataacaa |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30049882 |
ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaaaaaaatggaagagaaagggacaataacaa |
30049783 |
T |
|
| Q |
326 |
tgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatg |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049782 |
tgtttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatg |
30049683 |
T |
|
| Q |
426 |
tcatat----gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagc |
502 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30049682 |
tcatatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagc |
30049583 |
T |
|
| Q |
503 |
aataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttc |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30049582 |
aataaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttc |
30049483 |
T |
|
| Q |
603 |
ttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatattgttc |
702 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30049482 |
ttagctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttc |
30049383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 233 - 695
Target Start/End: Complemental strand, 7162828 - 7162343
Alignment:
| Q |
233 |
tagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaa-ttagagaagnnnnnnnntggaagagaaagggacaataacaatgttta |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7162828 |
tagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaaattagagaagaaaagaaatggaagagaaagggacaataacaatgttta |
7162729 |
T |
|
| Q |
332 |
ctatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatat |
431 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162728 |
ctatgctgcaaatttaatacaaaccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcatat |
7162629 |
T |
|
| Q |
432 |
gacataaacctacttaactt---------------------gtgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataaag |
509 |
Q |
| |
|
||||||||||| |||||||| |||||| ||| | |||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
7162628 |
gacataaacctgcttaacttgtgcagataaccttattacttgtgcagcatagttttactaacaaaataagttaaaatgattacacacataagcaataaag |
7162529 |
T |
|
| Q |
510 |
taacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctc |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
7162528 |
taacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctc |
7162429 |
T |
|
| Q |
610 |
catgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccat |
695 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7162428 |
catgaacttggcactagcaagtgccttttttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctccat |
7162343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 229 - 561
Target Start/End: Complemental strand, 30045477 - 30045121
Alignment:
| Q |
229 |
ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnn-tggaagagaaagggacaataacaatg |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30045477 |
ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaaaaaaatggaagagaaagggacaataacaatg |
30045378 |
T |
|
| Q |
328 |
tttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtc |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045377 |
tttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtc |
30045278 |
T |
|
| Q |
428 |
----atatgacataaacctacttaacttgtgcagataatc-------------------ttactaacaaaacaagttaaaataattacacacataagcaa |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045277 |
atatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaa |
30045178 |
T |
|
| Q |
505 |
taaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045177 |
taaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
30045121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 44732200 - 44732162
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
268 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
44732200 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
44732162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 44734513 - 44734475
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
268 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
44734513 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
44734475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 229 - 702
Target Start/End: Complemental strand, 3946129 - 3945637
Alignment:
| Q |
229 |
ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3946129 |
ttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaa----aaaaatggaagagaaagggacaataacaatgt |
3946034 |
T |
|
| Q |
329 |
ttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtca |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3946033 |
ttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtca |
3945934 |
T |
|
| Q |
429 |
tat----gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaat |
505 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945933 |
tatatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaat |
3945834 |
T |
|
| Q |
506 |
aaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttctta |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3945833 |
aaagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttctta |
3945734 |
T |
|
| Q |
606 |
gctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatattgttc |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3945733 |
gctccatgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttc |
3945637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 230 - 563
Target Start/End: Complemental strand, 3941729 - 3941377
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3941729 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaa----aaaaatggaagagaaagggacaataacaatgtt |
3941634 |
T |
|
| Q |
330 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtc-- |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941633 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
3941534 |
T |
|
| Q |
428 |
--atatgacataaacctacttaacttgtgcagataatc-------------------ttactaacaaaacaagttaaaataattacacacataagcaata |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941533 |
atatatgacataaacctacttaacttgtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaata |
3941434 |
T |
|
| Q |
507 |
aagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941433 |
aagtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
3941377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 22804970 - 22804930
Alignment:
| Q |
228 |
tttgttagcttttgtaatggcagcagaagcaataagctcaa |
268 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
22804970 |
tttgttagcttttgcaaaggcagcagaagcaataagctcaa |
22804930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 232 - 695
Target Start/End: Complemental strand, 22365754 - 22365272
Alignment:
| Q |
232 |
ttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgttta |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22365754 |
ttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgttta |
22365655 |
T |
|
| Q |
332 |
ctatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatat |
431 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22365654 |
ctatactgcaaatttgatacatatcatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagttgatgtcatat |
22365555 |
T |
|
| Q |
432 |
gacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaataaagtaa |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365554 |
gacataaacctacttaacttgtgcagataaccttacttatgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaa |
22365455 |
T |
|
| Q |
513 |
cataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccat |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
22365454 |
cataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttatctggaatactcccagcttgcttcttagctccat |
22365355 |
T |
|
| Q |
613 |
gaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccat |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22365354 |
gaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctccat |
22365272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 230 - 561
Target Start/End: Complemental strand, 22361369 - 22361019
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22361369 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt |
22361270 |
T |
|
| Q |
330 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22361269 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcat |
22361170 |
T |
|
| Q |
430 |
atgacataaacctacttaacttgtgcagataatc-------------------ttactaacaaaacaagttaaaataattacacacataagcaataaagt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361169 |
atgacataaacctacttaacttgtgcagataaccttacttgtgcagcatagctttactaacaaaacaagttaaaataattacacacataagcaataaagt |
22361070 |
T |
|
| Q |
511 |
aacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361069 |
aacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
22361019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 227 - 335
Target Start/End: Original strand, 36028804 - 36028912
Alignment:
| Q |
227 |
ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaat |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36028804 |
ttttgttagcttttgtaatggcagcagaagcaataagctcaaaaatagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaat |
36028903 |
T |
|
| Q |
327 |
gtttactat |
335 |
Q |
| |
|
||||||||| |
|
|
| T |
36028904 |
gtttactat |
36028912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 352 - 458
Target Start/End: Original strand, 23397192 - 23397298
Alignment:
| Q |
352 |
ataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaactt |
451 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| || |||||||| ||||||||| | | ||| ||| | |||||||||| |||||||||||| ||||||| |
|
|
| T |
23397192 |
ataccatccatacatctttcttacatatttagagtcaaatacttagtaatgacataacttatactttgttgatgtcatacgacataaacctatttaactt |
23397291 |
T |
|
| Q |
452 |
gtgcaga |
458 |
Q |
| |
|
|| |||| |
|
|
| T |
23397292 |
gtacaga |
23397298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 542
Target Start/End: Original strand, 23397337 - 23397404
Alignment:
| Q |
477 |
aagttaaaataattacacaca--taagcaataaagtaacataaacaataaagtattcagaaaagtttt |
542 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
23397337 |
aagttaaaatcattacacacacataggcaataaagtaacattaacaacgaaatattcagaaaagtttt |
23397404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 28784872 - 28784833
Alignment:
| Q |
229 |
ttgttagcttttgtaatggcagcagaagcaataagctcaa |
268 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
28784872 |
ttgttagcttttgcaaaggcagcagaagcaataagctcaa |
28784833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 5353344 - 5353382
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
268 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
5353344 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
5353382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 230 - 702
Target Start/End: Original strand, 39949304 - 39949793
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39949304 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt |
39949403 |
T |
|
| Q |
330 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
429 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| |
|
|
| T |
39949404 |
tactatgctgcaaattttttatatatcatccatacatccttcttacatacttatagccaaatacttagtaataactcagcctatgtttagctgatgtcat |
39949503 |
T |
|
| Q |
430 |
atgacataaacctacttaacttg----------------tgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataaagtaa |
512 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949504 |
atgacataaacctacttaacttgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaa |
39949603 |
T |
|
| Q |
513 |
cataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccat |
612 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
39949604 |
cataaacaataaagtataaagaaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccat |
39949703 |
T |
|
| Q |
613 |
gaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatattgttc |
702 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39949704 |
gaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttc |
39949793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 230 - 562
Target Start/End: Original strand, 39953696 - 39954045
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39953696 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt |
39953795 |
T |
|
| Q |
330 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
429 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||| |
|
|
| T |
39953796 |
tactatgctgcaaattttttatatatcatccatacatccttcttacatacttatagccaaatacttagtaataactcagtctatgtttagctgatgtcat |
39953895 |
T |
|
| Q |
430 |
atgacataaacctactta----------------acttgtgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataaagtaa |
512 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39953896 |
atgacataaacctacttaacttgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaa |
39953995 |
T |
|
| Q |
513 |
cataaacaataaagtattcagaaaagttttataggtcaattagtcaacac |
562 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39953996 |
cataaacaataaagtataaagaaaagttttataggtcaattagtcaacac |
39954045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 39569637 - 39569425
Alignment:
| Q |
18 |
ttaagtgggctgcaattcagaatcttcctacttttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39569637 |
ttaagtgggctgcaattcagaatcttcctacttttgcgcgtttgaggaaaggtttgctcacttcacttcaaggggaagccgttgagattgatattgagaa |
39569538 |
T |
|
| Q |
118 |
gcttgggctgcaagaaagaaaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39569537 |
gcttgggctgcaagaaagaaaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggac |
39569438 |
T |
|
| Q |
218 |
aggttcagatttt |
230 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39569437 |
aggttcagatttt |
39569425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 39344172 - 39344378
Alignment:
| Q |
18 |
ttaagtgggctgcaattcagaatcttcctacttttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaa |
117 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
39344172 |
ttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaa |
39344271 |
T |
|
| Q |
118 |
gcttgggctgcaagaaagaaaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggac |
217 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39344272 |
gcttgggttgcaagtaagaaaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgcatggac |
39344371 |
T |
|
| Q |
218 |
aggttca |
224 |
Q |
| |
|
||||||| |
|
|
| T |
39344372 |
aggttca |
39344378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 39358748 - 39358953
Alignment:
| Q |
18 |
ttaagtgggctgcaattcagaatcttcctacttttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaa |
117 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
39358748 |
ttaaatgggctgcaattcagaagcttcctacttttgaacgtttgaggaaaggtttgcttacttcacttcaaggggaagccaccgaggttgatgttgagaa |
39358847 |
T |
|
| Q |
118 |
gcttgggctgcaagaaagaaaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggac |
217 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39358848 |
gcttgggttgcaagaaagaaaagatttacttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggat |
39358947 |
T |
|
| Q |
218 |
aggttc |
223 |
Q |
| |
|
|||||| |
|
|
| T |
39358948 |
aggttc |
39358953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 39552799 - 39552595
Alignment:
| Q |
18 |
ttaagtgggctgcaattcagaatcttcctacttttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaa |
117 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
39552799 |
ttaaatgggctgcaattcagaaacttcctacttttgaacgtttgaggaaaggtttgctcacttcacttcaaggggaagccactgagatcgatgttgagaa |
39552700 |
T |
|
| Q |
118 |
gcttgggctgcaagaaagaaaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggac |
217 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||| ||| |
|
|
| T |
39552699 |
ccttgggttgcaagaaagaaaagatttacttgaaagacttgttagacttgctgaagaagacaatgaaaagtttttgctcaaactcaaggatcgaatcgac |
39552600 |
T |
|
| Q |
218 |
aggtt |
222 |
Q |
| |
|
||||| |
|
|
| T |
39552599 |
aggtt |
39552595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 39543576 - 39543371
Alignment:
| Q |
18 |
ttaagtgggctgcaattcagaatcttcctacttttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaa |
117 |
Q |
| |
|
|||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||| ||| || |||||||||||| |||||| ||||||||||| |
|
|
| T |
39543576 |
ttaaatgggctgccattcagaaacttcctacttttgcacgtttaaggaaaggtttgctctctttgctgcaaggggaagccactgagatcgatgttgagaa |
39543477 |
T |
|
| Q |
118 |
gcttgggctgcaagaaagaaaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggac |
217 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| |
|
|
| T |
39543476 |
gcttgggttgcaagaaagaaaagatttacttgaaagacttgttagacttgctgaagaggacaatgagaagtttttgctcaaactcaaggatcgaatcgac |
39543377 |
T |
|
| Q |
218 |
aggttc |
223 |
Q |
| |
|
|||||| |
|
|
| T |
39543376 |
aggttc |
39543371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 39332902 - 39333112
Alignment:
| Q |
18 |
ttaagtgggctgcaattcagaatcttcctacttttgcacgtttgaggaaaggtttgctcacttcccttcaaggggaagccgttgagattgatgttgagaa |
117 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||| | | || | ||||||||||||||||| |
|
|
| T |
39332902 |
ttaaatgggctgcaattcagatccttcctacttttgaacgtttgaggaaaggtttgctcacttcacttcaaggtggaaccatcgagattgatgttgagaa |
39333001 |
T |
|
| Q |
118 |
gcttgggctgcaagaaagaaaagatttgcttgaaagacttgttagacttgctgaagaggacaatgagaagtttctgctcaaacttaaggatcgaatggac |
217 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
39333002 |
ccttgggatgcaagaaaagaaagatttgctcgaaagacttgttagacttgctgaagaggacaatgaaaagtttctgctcaaacttaaggatcgaatagac |
39333101 |
T |
|
| Q |
218 |
aggttcagatt |
228 |
Q |
| |
|
|||||| |||| |
|
|
| T |
39333102 |
aggttcggatt |
39333112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 230 - 702
Target Start/End: Original strand, 196152 - 196632
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
196152 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacataaattagagaagaaaagaaatggaagagaaagagacaataacaatgtt |
196251 |
T |
|
| Q |
330 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
196252 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcat |
196351 |
T |
|
| Q |
430 |
atgacataaacctacttaacttgtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaataaagt |
510 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
196352 |
atgacgtaaacctacttaactcgtgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaatgattacacacataaacaataaagt |
196451 |
T |
|
| Q |
511 |
aacataaacaataaagtattcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctcc |
610 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
196452 |
aacataa-----------ttcagaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctcc |
196540 |
T |
|
| Q |
611 |
atgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccatattgttc |
702 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
196541 |
atgaacttggcactaggaagtgcttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttc |
196632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 230 - 563
Target Start/End: Original strand, 200538 - 200872
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
329 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
200538 |
tgttagcttttgtaatggtagcagaagcaataagctcaaaaacagaaa-------ttagagaagaaaagaaatggaagagaaagggacaataacaatgtt |
200630 |
T |
|
| Q |
330 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcat |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
200631 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcat |
200730 |
T |
|
| Q |
430 |
atgacataaacctacttaacttgtgcagataa-------------------tcttactaacaaaacaagttaaaataattacacacataagcaataaagt |
510 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
200731 |
atgaggtaaacctacttaacttgtgcagataaccttacttgtgcagcatagttttactaacaaaacaagttaaaatgattacacacataaacaataaagt |
200830 |
T |
|
| Q |
511 |
aacataaacaataaagtattcagaaaagttttataggtcaattagtcaacact |
563 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
200831 |
aacata-----------attcagaaaagttttataggtcaattagtcaacact |
200872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 32800678 - 32800637
Alignment:
| Q |
227 |
ttttgttagcttttgtaatggcagcagaagcaataagctcaa |
268 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
32800678 |
ttttgttagcttttgcaaaggcagcagaagcaataagctcaa |
32800637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 32798362 - 32798325
Alignment:
| Q |
231 |
gttagcttttgtaatggcagcagaagcaataagctcaa |
268 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
32798362 |
gttagcttttgcaaaggcagcagaagcaataagctcaa |
32798325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 228 - 561
Target Start/End: Complemental strand, 1330921 - 1330569
Alignment:
| Q |
228 |
tttgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
1330921 |
tttgttagcttttgtaatggcagcagaaacaataagctcaaaaacagaaaacagaaatcaaagaagaaaagaaatggaagagaaagggacaataacaatg |
1330822 |
T |
|
| Q |
328 |
tttactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |||||||||| ||||| ||| ||||||||| |
|
|
| T |
1330821 |
tttactatgctgcaaatttgatacataccatccttacatccttcttacatacttatagtcaaatacttactaatgactcaacctatactttgctgatgtc |
1330722 |
T |
|
| Q |
428 |
atatgacataaacctacttaacttgtgcagataa-------------------tcttactaacaaaacaagttaaaataattacacacataagcaataaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
1330721 |
atatgacataaacctacttaacttgtgcagataacattacttgtgcagtatagttttactaacaaaacaagttaaaatgattacacacataagcaataga |
1330622 |
T |
|
| Q |
509 |
gtaacataaacaataaagtattcagaaaagttttataggtcaattagtcaaca |
561 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1330621 |
gtaacataaacaataaagtattcagacaagttttataggtcaattagtcaaca |
1330569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 45336616 - 45336578
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
268 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
45336616 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
45336578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 45338928 - 45338890
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
268 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
45338928 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
45338890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1453 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: scaffold1453
Description:
Target: scaffold1453; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 230 - 409
Target Start/End: Complemental strand, 180 - 1
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagnnnnnnnntggaagagaaagggacaataacaatgtt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
180 |
tgttagcttttgtaatggcagcagaagcaataagctcaaaaacagaaaacagaaattagagaagaaaagaaatggaagagaaagggacaataacaatgtt |
81 |
T |
|
| Q |
330 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatactaagtaatgactcagc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
80 |
tactatgctgcaaatttgatacataccatccatacatccttcttacatacttatagccaaatacttagtaatgactcagc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 1550514 - 1550476
Alignment:
| Q |
230 |
tgttagcttttgtaatggcagcagaagcaataagctcaa |
268 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
1550514 |
tgttagcttttgcaaaggcagcagaagcaataagctcaa |
1550476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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