View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_low_50 (Length: 343)

Name: NF19631_low_50
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_low_50
NF19631_low_50
[»] chr3 (1 HSPs)
chr3 (17-336)||(6407137-6407456)
[»] chr4 (4 HSPs)
chr4 (17-178)||(40112935-40113096)
chr4 (174-336)||(40094474-40094636)
chr4 (74-177)||(2662538-2662641)
chr4 (101-162)||(9004766-9004827)
[»] chr1 (1 HSPs)
chr1 (77-249)||(653990-654161)
[»] chr6 (1 HSPs)
chr6 (108-228)||(3690402-3690522)
[»] chr5 (2 HSPs)
chr5 (101-228)||(32074058-32074185)
chr5 (74-247)||(3019605-3019778)
[»] chr2 (2 HSPs)
chr2 (101-228)||(28083395-28083522)
chr2 (101-162)||(1109102-1109163)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 6407137 - 6407456
Alignment:
Q  17 accattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgcacctcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6407137 accattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgcacctcaa 6407236  T
Q  117 catcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaataccgtgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||     
T  6407237 catcagcatatcttatcttttttggaggtaatcctatttcttggctatcacaaaaacaacgtactgtagcacgatcatcaactgaggctgaataccgtgc 6407336  T
Q  217 tgtagccactgcatctgctgaactcatgtggcttcaaaatttgcttcaagagcttcatataccattgtagaaaccacctctattattatgtgacaatgta 316  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6407337 tgtagccactacatctgctgaactcatgtggcttcaaaatttgcttcaagagcttcatataccattgtcgaaaccacctctattattatgtgacaatgta 6407436  T
Q  317 ggtgctacatatctctgctc 336  Q
    ||||||||||||||||||||    
T  6407437 ggtgctacatatctctgctc 6407456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 40113096 - 40112935
Alignment:
Q  17 accattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgcacctcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40113096 accattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgcacctcaa 40112997  T
Q  117 catcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40112996 catcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgt 40112935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 174 - 336
Target Start/End: Complemental strand, 40094636 - 40094474
Alignment:
Q  174 aacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgcatctgctgaactcatgtggcttcaaaatttgcttcaagagcttca 273  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40094636 aacgtactgtagcacgatcatcaaccgaggctgaataccgtgctgtagccactgcatctgctgaactcacgtggcttcaaaatttgcttcaagagcttca 40094537  T
Q  274 tataccattgtagaaaccacctctattattatgtgacaatgtaggtgctacatatctctgctc 336  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40094536 tataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacatgtctctgctc 40094474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 2662538 - 2662641
Alignment:
Q  74 acagatgcagactggggaggaaatatggatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaac 173  Q
    |||||||| || ||||| || ||||| |||||||| || || ||||| |||||||| || | | ||||||||||||||||||||||||| ||| | ||||    
T  2662538 acagatgctgattggggtggcaatatcgatgaccgtacttccacatctgcatatctaatatatcttggaggtaatcctatttcttggctctcaaggaaac 2662637  T
Q  174 aacg 177  Q
    ||||    
T  2662638 aacg 2662641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 9004827 - 9004766
Alignment:
Q  101 gatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggct 162  Q
    ||||| ||||| || || ||||| |||||||| |||||||| ||||||||||| ||||||||    
T  9004827 gatgatcgcacatccacttcagcgtatcttatattttttggtggtaatcctatctcttggct 9004766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 249
Target Start/End: Complemental strand, 654161 - 653990
Alignment:
Q  77 gatgcagactggggaggaaatatggatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaac 176  Q
    |||||||||||||| || |||||||| || ||||| || ||||  |||||||| || ||| ||| | |||| || |  |||||| ||||||| |||||||    
T  654161 gatgcagactggggtggcaatatggaagatcgcacatccacatttgcatatctcatttttcttgaaagtaaccccacctcttggttatcacgcaaacaac 654062  T
Q  177 gtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgcatctgctgaactcatgtggct 249  Q
    | ||||||||||| || ||||| ||||||||||||||||  || ||||||||| ||||||||||  |||||||    
T  654061 gcactgtagcacg-tcttcaactgaggctgaataccgtgcagtggccactgcaactgctgaactagtgtggct 653990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 3690522 - 3690402
Alignment:
Q  108 gcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctga 207  Q
    ||||||| |||||||||||| |||| |||||||| ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||| || ||||| ||    
T  3690522 gcacctccacatcagcatatattatattttttggtggtaatcctatctcatggctctcaaggaaacaacgtaccgtggcacgatcatccactgaggcaga 3690423  T
Q  208 ataccgtgttgtagccactgc 228  Q
    ||| ||||  || ||||||||    
T  3690422 atatcgtgcagttgccactgc 3690402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 228
Target Start/End: Original strand, 32074058 - 32074185
Alignment:
Q  101 gatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccg 200  Q
    ||||| |||||||| |||||||||||| |||| |||||||| ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||| |  |    
T  32074058 gatgatcgcacctccacatcagcatatattatattttttggtggtaatcctatctcatggctctcaaggaaacaacgtaccgtggcacgatcatccattg 32074157  T
Q  201 aggctgaataccgtgttgtagccactgc 228  Q
    |||| ||||| ||||  || ||||||||    
T  32074158 aggcagaatatcgtgcagttgccactgc 32074185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 247
Target Start/End: Original strand, 3019605 - 3019778
Alignment:
Q  74 acagatgcagactggggaggaaatatggatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaac 173  Q
    |||||||| || ||||  || ||||| |||||||| || || ||||| |||||||| || | ||||||||||||||||||||||||||| ||| | ||||    
T  3019605 acagatgctgattgggatggcaatattgatgaccgtacttccacatctgcatatctaatatattttggaggtaatcctatttcttggctctcaaggaaac 3019704  T
Q  174 aacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgcatctgctgaactcatgtgg 247  Q
    |||| || || ||  | ||||| || ||||||||||| || |  |||||||| ||| | |||||| | ||||||    
T  3019705 aacgcaccgttgctaggtcatccactgaggctgaatatcgagcagtagccacagcaacagctgaaattatgtgg 3019778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 28083522 - 28083395
Alignment:
Q  101 gatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccg 200  Q
    ||||| |||||||| |||||||||||| |||| |||||||| ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||| |  |    
T  28083522 gatgatcgcacctccacatcagcatatattatattttttggtggtaatcctatctcatggctctcaaggaaacaacgtaccgtggcacgatcatccaatg 28083423  T
Q  201 aggctgaataccgtgttgtagccactgc 228  Q
    |||| ||||| ||||  || ||||||||    
T  28083422 aggcagaatatcgtgcagttgccactgc 28083395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 1109163 - 1109102
Alignment:
Q  101 gatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggct 162  Q
    ||||| ||||| || || ||||| |||||||| |||||||| ||||||||||| ||||||||    
T  1109163 gatgatcgcacatccacttcagcgtatcttatattttttggtggtaatcctatctcttggct 1109102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University