View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_52 (Length: 340)
Name: NF19631_low_52
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 21571313 - 21571637
Alignment:
| Q |
1 |
tatctcaatgggttattatcgtaggaaaaccaactcgtatttgctaagaatgtctttgaaaacaatgtcttcgatcaattaaaagtttgatataatggat |
100 |
Q |
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| T |
21571313 |
tatctcaataggttattatcgtaggaaaaccaactcatatttgctaagaatgtctttgaaaacaatgtcttcgatcaattaaaagtttgatatattgtat |
21571412 |
T |
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| Q |
101 |
cgagaaaagaagttatattaatcataatgagttttgaaaatactccttatgtaaaaaattgaaaaatggacactcttcttaagtgtggtgaatgcacttg |
200 |
Q |
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| T |
21571413 |
cgagaaaagaagttatattaatcataatgagttttggaaatactccttatgtaaaatattgaaaaatggacactcttcttaagtgtggtgaatgcacttg |
21571512 |
T |
|
| Q |
201 |
taagacctaacttaaccataaatgttgatattgcaaagttagacgacttcccccaaattcaaacgtaggacgtaattgcatgttttattagtcggattgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21571513 |
taagacctaacttaaccataaatgttgatattgcaaagttagacgacttcccccaaattcaaacgtaggacgtaattgcatgttttattagtcggattgt |
21571612 |
T |
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| Q |
301 |
gttgttttgtcttttccctttctct |
325 |
Q |
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|||||||| |||||||||||||||| |
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| T |
21571613 |
gttgttttctcttttccctttctct |
21571637 |
T |
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