View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_low_53 (Length: 337)

Name: NF19631_low_53
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_low_53
NF19631_low_53
[»] chr5 (1 HSPs)
chr5 (10-337)||(2487070-2487397)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 2487397 - 2487070
Alignment:
Q  10 catcatcaataaaacttttctcctataaaacttattaataaaacccaatcaaggttgaataatcatgtattgcaagattaacgacgaatattcttattat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487397 catcatcaataaaacttttctcctataaaacttattaataaaacccaatcaaggttgaataatcatgtattgcaagattaacgacgaatattcttattat 2487298  T
Q  110 gaagtaaaagttctccaccctgagtagaaaatgctcatcgatttgtaccttgattctcctctcgttgtggaaagagtgcaaatgaaccaaataggtcaga 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2487297 gaagtaaaagttctccaccctgagtagaaaatgctcatcgatttgtaccttgattctcttctcgttgtggaaagagtgcaaatgaaccaaataggtcaga 2487198  T
Q  210 taaccgcgccaaagctgtctctgaggtagaccttgtgaaggactgcaatcagagacaacggtaaaagaacatcggaagccagaatatcaggtcaagcaag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2487197 taaccgcgccaaagctgtctctgaggtagaccttgtgaaggactgcaatcagagacaacggtaaaagaacatcggaagccagaatatcaggtcaagcaag 2487098  T
Q  310 aacgccatgcaaatctatgatgtttaaa 337  Q
    ||| ||||||||||||||||||||||||    
T  2487097 aacaccatgcaaatctatgatgtttaaa 2487070  T

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