View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_54 (Length: 329)
Name: NF19631_low_54
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 180 - 313
Target Start/End: Original strand, 24239715 - 24239848
Alignment:
| Q |
180 |
aaaatatttcctcgaagtagatcttcattgtagtagcttttgattagtttggcattgagaatccaaaatgtttgttaagtggaccaatatatgtatgttt |
279 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
24239715 |
aaaatattttctcaaagtagatcttcattgtagtagcttttgattagtttggcattaagaatccaaagtgtttgttcagtgggccaatatatgtatgttt |
24239814 |
T |
|
| Q |
280 |
gtgcttctttaatgcttatattgttaggatcatc |
313 |
Q |
| |
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|||||||||||||||| |||||||||| |||||| |
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| T |
24239815 |
gtgcttctttaatgctcatattgttagaatcatc |
24239848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 180 - 313
Target Start/End: Complemental strand, 32810259 - 32810126
Alignment:
| Q |
180 |
aaaatatttcctcgaagtagatcttcattgtagtagcttttgattagtttggcattgagaatccaaaatgtttgttaagtggaccaatatatgtatgttt |
279 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
32810259 |
aaaatattttctcaaagtagatcttcattgtagtagcttttgattagtttggtattaagaatccaaagtgtttgttcagtgggccaatatatgtatgttt |
32810160 |
T |
|
| Q |
280 |
gtgcttctttaatgcttatattgttaggatcatc |
313 |
Q |
| |
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||||||| |||||||| ||||||||||||||||| |
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| T |
32810159 |
gtgcttccttaatgctcatattgttaggatcatc |
32810126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 32811113 - 32811070
Alignment:
| Q |
141 |
atctctgaccttagtataacttttgattagtttaaaccaaaaat |
184 |
Q |
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|||||||||||||||||| || || ||||||||||||||||||| |
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| T |
32811113 |
atctctgaccttagtatagctcttcattagtttaaaccaaaaat |
32811070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 180 - 313
Target Start/End: Original strand, 19886496 - 19886629
Alignment:
| Q |
180 |
aaaatatttcctcgaagtagatcttcattgtagtagcttttgattagtttggcattgagaatccaaaatgtttgttaagtggaccaatatatgtatgttt |
279 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
19886496 |
aaaatattttctcaaagtagatcttcattgtagtagcttttgattagtttggtattaagaatccaaagtgtttgttcagtgggccaatatatgtatgttt |
19886595 |
T |
|
| Q |
280 |
gtgcttctttaatgcttatattgttaggatcatc |
313 |
Q |
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||||||| |||||||| ||||||||||||||||| |
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| T |
19886596 |
gtgcttccttaatgctcatattgttaggatcatc |
19886629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 184
Target Start/End: Original strand, 19885701 - 19885744
Alignment:
| Q |
141 |
atctctgaccttagtataacttttgattagtttaaaccaaaaat |
184 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||||| |
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|
| T |
19885701 |
atctctgaccttagtatagctcttcattagtttaaaccaaaaat |
19885744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 181 - 313
Target Start/End: Complemental strand, 11494049 - 11493917
Alignment:
| Q |
181 |
aaatatttcctcgaagtagatcttcattgtagtagcttttgattagtttggcattgagaatccaaaatgtttgttaagtggaccaatatatgtatgtttg |
280 |
Q |
| |
|
|||||||| ||| || ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||| |
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| T |
11494049 |
aaatattttctcaaactagatcttcatcgtagtagcttttgattagtttggcattaagaatccaaagtgtttgttcagtgggccaatatatgtatgtttg |
11493950 |
T |
|
| Q |
281 |
tgcttctttaatgcttatattgttaggatcatc |
313 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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|
| T |
11493949 |
tgcttctttaatgctcatattgttaggatcatc |
11493917 |
T |
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