View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_low_56 (Length: 326)

Name: NF19631_low_56
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_low_56
NF19631_low_56
[»] chr1 (2 HSPs)
chr1 (222-307)||(18306253-18306338)
chr1 (10-96)||(18306452-18306536)
[»] chr2 (1 HSPs)
chr2 (10-96)||(39766441-39766527)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 18306338 - 18306253
Alignment:
Q  222 gatctttaattattttctttccatggtgcatttctcattcgcactcctgcactttgttgcttagattctttatttcacattgccaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18306338 gatctttaattattttctttccatggtgcatttctcattcgcactcctgcactttgttgcttagattctttatttcacattgccaa 18306253  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 18306536 - 18306452
Alignment:
Q  10 attatactgtaatcaatatatacgatgatattgagtcatggttgactcatcaagatgatttcctaatcaatatacattgatgtgtca 96  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18306536 attatactgtaatcaatatatacgatgat--tgagtcatggttgactcatcaagatgatttcctaatcaatatacattgatgtgtca 18306452  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 39766527 - 39766441
Alignment:
Q  10 attatactgtaatcaatatatacgatgatattgagtcatggttgactcatcaagatgatttcctaatcaatatacattgatgtgtca 96  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39766527 attatactgtaaacaatatatacaatgatattgagtcatggttaactcatcaagatgatttcctaatcaatatacattgatgtgtca 39766441  T

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