View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_low_57 (Length: 320)

Name: NF19631_low_57
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_low_57
NF19631_low_57
[»] chr8 (3 HSPs)
chr8 (16-308)||(44218353-44218645)
chr8 (71-127)||(20171813-20171869)
chr8 (62-124)||(31686143-31686205)
[»] chr3 (3 HSPs)
chr3 (122-186)||(9716942-9717005)
chr3 (65-128)||(346591-346654)
chr3 (62-128)||(34209854-34209920)
[»] scaffold0516 (1 HSPs)
scaffold0516 (124-177)||(1904-1957)
[»] chr1 (2 HSPs)
chr1 (124-177)||(23727394-23727447)
chr1 (87-128)||(42332477-42332518)
[»] chr7 (2 HSPs)
chr7 (71-127)||(44393523-44393579)
chr7 (70-128)||(14755766-14755824)
[»] chr4 (3 HSPs)
chr4 (71-127)||(34738028-34738084)
chr4 (62-127)||(5874249-5874314)
chr4 (71-128)||(21802752-21802809)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 44218645 - 44218353
Alignment:
Q  16 cattaggaagtatagtaagtagatgtacnnnnnnnggagtgagacctttgtgagatgacacataagtaaaatgtagattataatacatgcatgtagagat 115  Q
    ||||||||||||||||||||||||| ||       |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44218645 cattaggaagtatagtaagtagatgcacaaaaaaaggagtgaggcgtttgtgagatgacacataagcaaaatgtagattataatacatgcatgtagagat 44218546  T
Q  116 agagatagagataaacatcatatatgcagtgaaaagaggaaagatttccttcatcatgggaagacaaagaatatacatatacaataactctagtaataag 215  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44218545 agagatagagataaacatcatatatgtagtgaaaagaggaaagatttccttcatcatgggaagacaaagaatatacatatacaataactctagtactaag 44218446  T
Q  216 ggatnnnnnnntattagtacaaataaacaaccaaattaaaattcaggacaaatgaatacaatagcatcatggtgaaaatatattagaataatt 308  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44218445 ggataaaaaaatattagtacaaataaacaaccaaattaaaattcaggacaaatgaatacaatagcatcatggtgaaaatatattagaataatt 44218353  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 20171869 - 20171813
Alignment:
Q  71 tgacacataagtaaaatgtagattataatacatgcatgtagagatagagatagagat 127  Q
    ||||||||||| ||||||||| ||| |||||||  || |||||||||||||||||||    
T  20171869 tgacacataagcaaaatgtagtttaaaatacatatatatagagatagagatagagat 20171813  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 31686205 - 31686143
Alignment:
Q  62 tttgtgagatgacacataagtaaaatgtagattataatacatgcatgtagagatagagataga 124  Q
    |||||||| ||||||||||| || |||||| ||| |||||||| ||  |||||||||||||||    
T  31686205 tttgtgaggtgacacataagcaatatgtagtttagaatacatgtatacagagatagagataga 31686143  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 9717005 - 9716942
Alignment:
Q  122 agagataaacatcatatatgcagtgaaaagaggaaagatttccttcatcatgggaagacaaagaa 186  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||    
T  9717005 agagataagcatcatatatgtagtgaaaagaggaaaga-ttccttcatcatgggaaaacaaagaa 9716942  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 346654 - 346591
Alignment:
Q  65 gtgagatgacacataagtaaaatgtagattataatacatgcatgtagagatagagatagagata 128  Q
    ||||||||||||||||| ||||||||| ||| |||||||| || ||||||||||||||||||||    
T  346654 gtgagatgacacataagcaaaatgtagtttagaatacatgtatatagagatagagatagagata 346591  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 34209920 - 34209854
Alignment:
Q  62 tttgtgagatgacacataagtaaaatgtagattataatacatgcatgtagagatagagatagagata 128  Q
    ||||||||||||||  |||| ||| ||||  ||| |||||||| || ||||||||||||||||||||    
T  34209920 tttgtgagatgacatgtaagcaaagtgtaatttagaatacatgtatatagagatagagatagagata 34209854  T

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Target: scaffold0516 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 1957 - 1904
Alignment:
Q  124 agataaacatcatatatgcagtgaaaagaggaaagatttccttcatcatgggaa 177  Q
    |||||| ||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  1957 agataagcatcatacatgtagtgaaaagaggaaatatttccttcatcatgggaa 1904  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 23727394 - 23727447
Alignment:
Q  124 agataaacatcatatatgcagtgaaaagaggaaagatttccttcatcatgggaa 177  Q
    |||||| ||||||| ||| |||||||||||||||| |||||||| |||||||||    
T  23727394 agataagcatcatacatgtagtgaaaagaggaaagttttccttcgtcatgggaa 23727447  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 42332518 - 42332477
Alignment:
Q  87 tgtagattataatacatgcatgtagagatagagatagagata 128  Q
    ||||| |||||||||||| || ||||||||||||||||||||    
T  42332518 tgtagtttataatacatgtatatagagatagagatagagata 42332477  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 44393579 - 44393523
Alignment:
Q  71 tgacacataagtaaaatgtagattataatacatgcatgtagagatagagatagagat 127  Q
    ||||||||||| ||||||||| ||| |||||||  || |||||||||||||||||||    
T  44393579 tgacacataagcaaaatgtagtttaaaatacatatatatagagatagagatagagat 44393523  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 14755824 - 14755766
Alignment:
Q  70 atgacacataagtaaaatgtagattataatacatgcatgtagagatagagatagagata 128  Q
    ||||||||| || ||| ||||| ||| |||||||| || ||||||||||||||||||||    
T  14755824 atgacacatcagcaaagtgtagcttagaatacatgtatatagagatagagatagagata 14755766  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 34738028 - 34738084
Alignment:
Q  71 tgacacataagtaaaatgtagattataatacatgcatgtagagatagagatagagat 127  Q
    ||||||||| | ||||||||| ||| |||||||| || |||||||||||||||||||    
T  34738028 tgacacatatgcaaaatgtaggttagaatacatgtatatagagatagagatagagat 34738084  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 5874314 - 5874249
Alignment:
Q  62 tttgtgagatgacacataagtaaaatgtagattataatacatgcatgtagagatagagatagagat 127  Q
    |||||||||  |||||| || ||| ||||| ||| |||||||| || |||||||||||||||||||    
T  5874314 tttgtgagaaaacacatgagcaaagtgtagcttagaatacatgtatatagagatagagatagagat 5874249  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 21802809 - 21802752
Alignment:
Q  71 tgacacataagtaaaatgtagattataatacatgcatgtagagatagagatagagata 128  Q
    ||||||||| |  |||||||| ||| |||||||| || ||||||||||||||||||||    
T  21802809 tgacacataggcgaaatgtagcttagaatacatgtatatagagatagagatagagata 21802752  T

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