View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_58 (Length: 318)
Name: NF19631_low_58
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_58 |
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| [»] scaffold0649 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 32 - 305
Target Start/End: Original strand, 20966758 - 20967033
Alignment:
| Q |
32 |
atttgtttccaccttagtaagttaccttacgctaacgctacttagccctagtcatataacaattggtttgcgccgtaacgagtctttgtatgtgtt-ggg |
130 |
Q |
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| T |
20966758 |
atttgtttccaccttagtaagttaccttacgctaacgctac------------atataa--attggtttgcgccgtaacgagtctctgtatgtgttaggg |
20966843 |
T |
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| Q |
131 |
ttcagctttcaactccaacgcatagttgccatgagtaacatcattcaatctaattcgcc---------------gccgtcgtcaccaattctccccgacg |
215 |
Q |
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| T |
20966844 |
ttcagctttcaactccaacgcacaattacgatgagtaacatcattcaatctaattcgccacgtaaagccaaagtgccgtcgtcattgatcctcccggacg |
20966943 |
T |
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| Q |
216 |
atctcatcgcggaagttctatcattgcttgacataaaatttctgatgcaactcaaatgtgtttgcaaatcatggaattcactcatctcct |
305 |
Q |
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| T |
20966944 |
atctcatcgctgaagtcctatcattgcttgacataaaatttctgatgcaactcaaatgtgtttgcaaatcatggaattcactcatctcct |
20967033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 206 - 305
Target Start/End: Original strand, 20979746 - 20979845
Alignment:
| Q |
206 |
ctccccgacgatctcatcgcggaagttctatcattgcttgacataaaatttctgatgcaactcaaatgtgtttgcaaatcatggaattcactcatctcct |
305 |
Q |
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| T |
20979746 |
ctccccgacgatctcatcgctgaagtcctatcatttcttgacataaaatttctgatgcaactcaaatgtgtttgcaaatcatggaattcactcatctcct |
20979845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 4582 - 4683
Alignment:
| Q |
203 |
attctccccgacgatctcatcgcggaagttctatcattgcttgacataaaatttctgatgcaactcaaatgtgtttgcaaatcatggaattcactcatct |
302 |
Q |
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| T |
4582 |
attctcccccacgacctcgtcgccgaaatcctatccttccttgacgtgaaatctcttacgaaactcaaatgtgtgagcaaatcatggaactcactcatct |
4681 |
T |
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| Q |
303 |
cc |
304 |
Q |
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|| |
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| T |
4682 |
cc |
4683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 6402619 - 6402573
Alignment:
| Q |
251 |
aaatttctgatgcaactcaaatgtgtttgcaaatcatggaattcact |
297 |
Q |
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| T |
6402619 |
aaattcctgatgacactcaaatgtgtctgcaaatcatggaattcact |
6402573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 12735715 - 12735682
Alignment:
| Q |
258 |
tgatgcaactcaaatgtgtttgcaaatcatggaa |
291 |
Q |
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| T |
12735715 |
tgatgcaattcaaatgtgtttgcaaatcatggaa |
12735682 |
T |
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