View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_59 (Length: 318)
Name: NF19631_low_59
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 5273641 - 5273943
Alignment:
| Q |
1 |
ttctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagta |
100 |
Q |
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| T |
5273641 |
ttctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagta |
5273740 |
T |
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| Q |
101 |
gaactgttacaattccatacactttcctcattcatctcaatctcgaactttgacaccttaaccaacccggttcaaacacaagccggtgatgacgccaaaa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273741 |
gaactgttacaattccacacactttcctcattcatctcaatctcgaacttcgacaccttaaccaacccggttcaaacacaagccggtgatgacgccaaaa |
5273840 |
T |
|
| Q |
201 |
ggctacaacttaatgtaacaacttctggcggtagccatgtcagcatgacaactggcacggttaacgcaaccgttactggaacagtttacacagacaacaa |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5273841 |
ggctacaacttaatgtaaccacttctggcggtagccatgtcagcatgacaactggcacggttaatgcaaccgttactggaacagtttacacagacaacaa |
5273940 |
T |
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| Q |
301 |
act |
303 |
Q |
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||| |
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| T |
5273941 |
act |
5273943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 36151143 - 36151324
Alignment:
| Q |
11 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
110 |
Q |
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| T |
36151143 |
ggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttac |
36151242 |
T |
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| Q |
111 |
aattccatacactttcctcattcatctcaatctcgaactttgacaccttaaccaacccggttcaaacacaagccggtgatga |
192 |
Q |
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| T |
36151243 |
agtttcactcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagccggtgatga |
36151324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 36154535 - 36154710
Alignment:
| Q |
17 |
ttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttacaattcc |
116 |
Q |
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|||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| ||||| || | |
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| T |
36154535 |
ttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttacagtttc |
36154634 |
T |
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| Q |
117 |
atacactttcctcattcatctcaatctcgaactttgacaccttaaccaacccggttcaaacacaagccggtgatga |
192 |
Q |
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| T |
36154635 |
actcccttgcttcattcgtttctatttcaaacttcgataccttaaccaaccctgttcaaacacaagccggtgatga |
36154710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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