View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_low_63 (Length: 302)
Name: NF19631_low_63
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_63 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 286
Target Start/End: Original strand, 24529050 - 24529327
Alignment:
| Q |
9 |
gaaaagaaacgacaatgaaggcgaaacgacgactgaaagcagaagnnnnnnncgaagatgatggcattgacgaccgaatcagcactcttccggacgcctt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24529050 |
gaaaagaaacgacaatgaaggcgaaacgacgactgaaagcagaagaaaaaaacgaagatgatgacattgacgacagaatcagcactcttccggacgcctt |
24529149 |
T |
|
| Q |
109 |
actacgtcacattctgtctttcctccctaccgacacctgcgttcgtacaagtcttatctctcgcaggtggcgttacctctggaagactcttcaagtcttc |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24529150 |
actacgccacattctgtctttcctccctaccgacacctgcgttcgtacaagtcttatctctcgcaggtggcgttacctctggaagactcttcaagtcttc |
24529249 |
T |
|
| Q |
209 |
gatttccacgattactctcaacacaatgccgaactgtttatgtcattcaccgttttcgtcaacgctgtcctcgctctc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24529250 |
gatttccacgattactctcaacacaatgccgaactgtttatgtcattcaccgttttcgtcaacgctgtcctcgctctc |
24529327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University