View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_low_65 (Length: 300)
Name: NF19631_low_65
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_65 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 66 - 233
Target Start/End: Complemental strand, 43655777 - 43655612
Alignment:
| Q |
66 |
ataacaggcaggaagacacaactttacatggcaattgcttgcaacgtcgtagttagaaattgtgataatcatgtttctatttattgtcaataatgataat |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43655777 |
ataacaggcaggaagacacaactttacatggcaattgcttgcaacgtcatagttagaaattgtgataatcatgtttctatttaatgtcaataatgataat |
43655678 |
T |
|
| Q |
166 |
aacaataactcctaatataccataaacacttacgcacatcttaatgcataacaattaaaaagagaaca |
233 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43655677 |
aacaataacttcta--ataccataaacacttaggcacatcttaatgcataacaattaaaaagagaaca |
43655612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 300
Target Start/End: Complemental strand, 43655622 - 43655579
Alignment:
| Q |
258 |
aaaagagaacaaattt-attatacgcatcaaatttaaaatctat |
300 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
43655622 |
aaaagagaacaaattttattgtacgcatcaaatttaaaatctat |
43655579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 64 - 226
Target Start/End: Complemental strand, 8364770 - 8364610
Alignment:
| Q |
64 |
tcataacaggcaggaagacacaactttacatggcaattgcttgcaacgtcgtagttagaaattgtgataatcatgtttctatttattgtcaataatgata |
163 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8364770 |
tcataacagacaggaagacacaactttacatggcaattgcttgcaacgtcatagttagaaattgtgataatcatgtttctatttaatgtcaataatgata |
8364671 |
T |
|
| Q |
164 |
ataacaataactcctaatataccataaacacttacgcacatcttaatgcataacaattaaaaa |
226 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8364670 |
ataacaataactccta--ataccataaacacttaggcacatcttaatgcataacaattaaaaa |
8364610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University