View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19631_low_73 (Length: 287)

Name: NF19631_low_73
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19631_low_73
NF19631_low_73
[»] chr8 (5 HSPs)
chr8 (157-269)||(44668662-44668774)
chr8 (1-57)||(44668610-44668666)
chr8 (71-133)||(29470804-29470866)
chr8 (71-133)||(45256433-45256495)
chr8 (78-133)||(17658310-17658365)
[»] chr7 (5 HSPs)
chr7 (157-269)||(12528898-12529014)
chr7 (1-57)||(12529010-12529066)
chr7 (71-133)||(18654441-18654503)
chr7 (71-133)||(20047739-20047801)
chr7 (180-256)||(48187556-48187632)
[»] chr5 (3 HSPs)
chr5 (71-133)||(8891966-8892028)
chr5 (71-129)||(7001374-7001432)
chr5 (71-133)||(6048707-6048769)
[»] scaffold0308 (1 HSPs)
scaffold0308 (71-133)||(11550-11612)
[»] chr1 (1 HSPs)
chr1 (71-130)||(41181683-41181742)
[»] chr3 (4 HSPs)
chr3 (71-133)||(32093520-32093582)
chr3 (71-133)||(32233687-32233749)
chr3 (71-125)||(47536740-47536794)
chr3 (71-133)||(19221599-19221661)
[»] chr2 (1 HSPs)
chr2 (71-133)||(9393007-9393069)
[»] chr4 (1 HSPs)
chr4 (71-133)||(1844866-1844928)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 157 - 269
Target Start/End: Original strand, 44668662 - 44668774
Alignment:
Q  157 tagttgaaaattataccgtaaccccaaaccaaagcctttaataaggatcaagagtaccctaagtttgaaactaagttagtacatctttatttgtgaaggt 256  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44668662 tagttgaaaattataccgttaccccaaaccaaagcctttaataaggatcaagagtaccctaagtttgaaactaagttagtacatctttatttgtgaaggt 44668761  T
Q  257 tgtgaggtagtat 269  Q
    |||||||||||||    
T  44668762 tgtgaggtagtat 44668774  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 44668610 - 44668666
Alignment:
Q  1 cttagtaattaaaagattatattttgatagaaccaaataactaggtacaagttagtt 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44668610 cttagtaattaaaagattatattttgatagaaccaaataactaggtacaagttagtt 44668666  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 29470866 - 29470804
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    ||||||||||||||| |||||||||||||||||||| |||||||| | ||| |||| ||||||    
T  29470866 aacaataaaaaatgaaatatatattaaccaccaaaagcagctcctgtagcataaggtgtgcca 29470804  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 45256495 - 45256433
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||| | |||||||| ||||||    
T  45256495 aacaatagaaaatgaaatatatattaaccaccaaaaacaactcctctagcacaaggtgtgcca 45256433  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 17658310 - 17658365
Alignment:
Q  78 aaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    |||||||  |||||||||||||||||||| |||||||| | |||||||| ||||||    
T  17658310 aaaaatggaatatatattaaccaccaaaagcagctcctgtagcacaaggtgtgcca 17658365  T

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Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 12529014 - 12528898
Alignment:
Q  157 tagttgaaaattataccgtaaccccaaaccaaagcctttaata----aggatcaagagtaccctaagtttgaaactaagttagtacatctttatttgtga 252  Q
    ||||||||||||||||||||||  |||||||||||||||||||    |||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  12529014 tagttgaaaattataccgtaacttcaaaccaaagcctttaatatataaggatcaagagtaccctaagtttgaaactatgttagtacatctttatttgtta 12528915  T
Q  253 aggttgtgaggtagtat 269  Q
    |||||||||||||||||    
T  12528914 aggttgtgaggtagtat 12528898  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12529066 - 12529010
Alignment:
Q  1 cttagtaattaaaagattatattttgatagaaccaaataactaggtacaagttagtt 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12529066 cttagtaattaaaagattatattttgatagaaccaaataactaggcacaagttagtt 12529010  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 18654503 - 18654441
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    ||||||||||||||  ||||| |||||||||||||| || ||||| | |||||||| ||||||    
T  18654503 aacaataaaaaatggaatataaattaaccaccaaaagcaactcctctagcacaaggtgtgcca 18654441  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 20047801 - 20047739
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    ||||||||||||||  |||||||||||||||||||| || ||||| | | |||||| ||||||    
T  20047801 aacaataaaaaatggaatatatattaaccaccaaaagcaactcctctagtacaaggtgtgcca 20047739  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 48187632 - 48187556
Alignment:
Q  180 ccaaaccaaagcctttaataaggatcaagagtaccctaagtttgaaactaagttagtacatctttatttgtgaaggt 256  Q
    ||||||||||||| ||| || |||||| |||||||  |||| ||||||||||||| ||  | |||| ||||||||||    
T  48187632 ccaaaccaaagcccttagtacggatcaggagtacctcaagtatgaaactaagttattaagtatttaattgtgaaggt 48187556  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 8891966 - 8892028
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  8891966 aacaataaaaaatgggatatatattaaccaccaaaagcagctcctatagcacaaggcgtgcca 8892028  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 7001432 - 7001374
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgt 129  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||    
T  7001432 aacaataaaaaatgggatatatattaaccaccaaaagcagctcctatagcataaggcgt 7001374  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 6048707 - 6048769
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    ||||||||||||||  |||||||||||||||||||| || ||||| | ||| |||| ||||||    
T  6048707 aacaataaaaaatggaatatatattaaccaccaaaagcaactcctctagcataaggtgtgcca 6048769  T

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Target: scaffold0308 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 11550 - 11612
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  11550 aacaatcaaaaatgggatatatattaaccaccaaaagcagctcctatagcacaaggcgtgcca 11612  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 130
Target Start/End: Original strand, 41181683 - 41181742
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtg 130  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| |||||| |||||    
T  41181683 aacaataaaaaatgggatatatattaaccaccaaaagcagctcctatagcacaatgcgtg 41181742  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 32093582 - 32093520
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||    
T  32093582 aacaatcaaaaatgggatatatattaaccaccaaaagcagctcctatagtacaaggcgtgcca 32093520  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 32233749 - 32233687
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    ||||||||||||||| || ||||||||||||||||| || ||||| | |||||||| ||||||    
T  32233749 aacaataaaaaatgaaatttatattaaccaccaaaagcaactcctctagcacaaggtgtgcca 32233687  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 47536740 - 47536794
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaag 125  Q
    ||||||||||||||  || |||||||||||||||||||||||||| | |||||||    
T  47536740 aacaataaaaaatggaatttatattaaccaccaaaaacagctcctgtagcacaag 47536794  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 19221599 - 19221661
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    ||||||||||||||  |||||||||||| ||||||| || ||||| | |||||||| ||||||    
T  19221599 aacaataaaaaatggaatatatattaacaaccaaaagcaactcctctagcacaaggtgtgcca 19221661  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 9393007 - 9393069
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    ||||||||||||||| |||||||||||||||||||| || ||||| | |||||||| ||||||    
T  9393007 aacaataaaaaatgaaatatatattaaccaccaaaagcaactcctctagcacaaggtgtgcca 9393069  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 1844928 - 1844866
Alignment:
Q  71 aacaataaaaaatgagatatatattaaccaccaaaaacagctcctattgcacaaggcgtgcca 133  Q
    ||||||||||||||  || ||||||||||| |||||||| ||||| | |||||||| ||||||    
T  1844928 aacaataaaaaatggaatttatattaaccatcaaaaacaactcctctagcacaaggtgtgcca 1844866  T

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