View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_75 (Length: 282)
Name: NF19631_low_75
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 21971337 - 21971608
Alignment:
| Q |
1 |
taatgaggatttcttaagggggaagaagaatcacgtgtactcttaatatcaaaaatagaaatagcaataacttaattttaatacttttgacttttgctaa |
100 |
Q |
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| T |
21971337 |
taatgaggatttcttaagggggaagaagaatcacgtgtactcttaatatcaaaaatagaaatagcaataacttaattttaatacttttgacttttgctaa |
21971436 |
T |
|
| Q |
101 |
ggggtaagcattaaaaacacgatgggaggaatttacgaagcctagttatgtttaccatcctcaatttctttaaactgtaaatcaatttgggcaatgtaaa |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
21971437 |
ggggtaagcattaaaaacactatgggaggaatttacgaagcctagttatgtttaccatcctctatttctttaaactgtaaatcaatttgggcaatgcaaa |
21971536 |
T |
|
| Q |
201 |
ccggtgccccgaggaccaataaataataattaaataaatgatctcccttaactcatctcaattaaagtataat |
273 |
Q |
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| T |
21971537 |
cgggtg-cccaaggaacaataaataataattaaataaatgatctcacttaactcatctcaattaaagtataat |
21971608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 31167063 - 31167001
Alignment:
| Q |
212 |
aggaccaataaataataattaaataaatga-tctcccttaactcatctcaattaaagtataat |
273 |
Q |
| |
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| T |
31167063 |
aggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataat |
31167001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 26759216 - 26759278
Alignment:
| Q |
212 |
aggaccaataaataataattaaataaatg-atctcccttaactcatctcaattaaagtataat |
273 |
Q |
| |
|
|||| ||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||| |
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| T |
26759216 |
aggaacaataaatagtaattaaataaatggatctcacttaattcatctcaattaaagtataat |
26759278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 39865407 - 39865345
Alignment:
| Q |
212 |
aggaccaataaataataattaaataaatga-tctcccttaactcatctcaattaaagtataat |
273 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||| |
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|
| T |
39865407 |
aggaacaataaatagtaattaaataaatgaatctcacttaattcatctcaattaaagtataat |
39865345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 29770779 - 29770841
Alignment:
| Q |
212 |
aggaccaataaataataattaaataaatg-atctcccttaactcatctcaattaaagtataat |
273 |
Q |
| |
|
|||| ||||||||| |||||||||||||| ||||| ||||| |||||||| |||||||||||| |
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|
| T |
29770779 |
aggaacaataaatagtaattaaataaatgaatctcacttaattcatctcagttaaagtataat |
29770841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 39121943 - 39121881
Alignment:
| Q |
212 |
aggaccaataaataataattaaataaatg-atctcccttaactcatctcaattaaagtataat |
273 |
Q |
| |
|
|||| ||||||||| |||||||||||||| ||||| ||||| | ||||||||||||||||||| |
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|
| T |
39121943 |
aggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaagtataat |
39121881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 23566998 - 23566936
Alignment:
| Q |
212 |
aggaccaataaataataattaaataaatga-tctcccttaactcatctcaattaaagtataat |
273 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| | || ||||| ||||||||||||||||||||| |
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|
| T |
23566998 |
aggaacaataaatagtaattaaataaatgaatatcacttaattcatctcaattaaagtataat |
23566936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 28103811 - 28103873
Alignment:
| Q |
212 |
aggaccaataaataataattaaataaat-gatctcccttaactcatctcaattaaagtataat |
273 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||| ||||| |||||||||||| ||| |||| |
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|
| T |
28103811 |
aggaacaataaataatcattaaataaatggatctcacttaattcatctcaattagagtgtaat |
28103873 |
T |
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