View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_78 (Length: 279)
Name: NF19631_low_78
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 20990969 - 20990710
Alignment:
| Q |
1 |
aagggaccattgtccataacccccaacataatggatcacttaaaatcttctaataaaagtttccaagtatgtatggccatacttggaaaccggttggaat |
100 |
Q |
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| T |
20990969 |
aagggaccattgtccataacccccaacataatggatcacttaaaatcttctaataaaagtttccaagtatgtatggccatacttggaaaccggttgga-t |
20990871 |
T |
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| Q |
101 |
gtgaagaagatactaactgaaatggaagagaagaaaattgtgctcaacgaagttggtcaaaactatcttgtctacggtttcttgcaatgtaaggatttgt |
200 |
Q |
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| T |
20990870 |
gtgaagaagatactaactgaaatggaagagaagaaaattgtgctcaacgaagttggtcaaaactatcttgtctatggtttcttgcaatgtaaggatttgt |
20990771 |
T |
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| Q |
201 |
ccagttctttgcatcatcttactaccatgatttcaaagggaatcaaaccaagtgaccgaag |
261 |
Q |
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| T |
20990770 |
ccagttctttgcatcatcttactaccatgatttcaaaaggaatcaaaccaagtgaccgaag |
20990710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 21002154 - 21001981
Alignment:
| Q |
84 |
tggaaaccggttggaatgtgaagaagatactaactgaaatggaagagaagaaaattgtgctcaacgaagttggtcaaaactatcttgtctacggtttctt |
183 |
Q |
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| T |
21002154 |
tggaaaccagttgga-tgttaagaagatactaactgatatgaaagagaagaaaattgtactcgacgaagttggtcaaaactatcttgtctatggtttctt |
21002056 |
T |
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| Q |
184 |
gcaatgtaaggatttgtccagttctttgcatcatcttactaccatgatttcaaagggaatcaaaccaagtgaccg |
258 |
Q |
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| T |
21002055 |
gcaatgtaaggatttgtccagttctttgcattatcttactaccatgatttcaaagggactaaaaccgagtgaccg |
21001981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 20979828 - 20979912
Alignment:
| Q |
1 |
aagggaccattgtccataacccccaacataatggatcacttaaaatcttctaataaaagtttccaagtatgtatggccatacttg |
85 |
Q |
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| T |
20979828 |
aagggaccattgtccataacccccaacacaatggatcacttaatatcttctaataaactttgcctagtatgtatgtccatacttg |
20979912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 20992580 - 20992664
Alignment:
| Q |
1 |
aagggaccattgtccataacccccaacataatggatcacttaaaatcttctaataaaagtttccaagtatgtatggccatacttg |
85 |
Q |
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| T |
20992580 |
aagggaccattctctatgacccccaacataatggatcacttgatatcttctaataaaatttaccaaatatgtgtgtccatacttg |
20992664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 20978863 - 20978808
Alignment:
| Q |
30 |
aatggatcacttaaaatcttctaataaaagtttccaagtatgtatggccatacttg |
85 |
Q |
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| T |
20978863 |
aatggatcacttaatatcttctaatcgaagtttccaagtatgtatgtccatacttg |
20978808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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