View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_8 (Length: 574)
Name: NF19631_low_8
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_8 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 136 - 559
Target Start/End: Complemental strand, 4460118 - 4459681
Alignment:
| Q |
136 |
cttgtgtaattgcatattcacatgctttaataattaataaacctatgagttgtatccaaatattatgagtactactaatttatgagttctcgatatatag |
235 |
Q |
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| T |
4460118 |
cttgtgtaattgcatattcacatgctttaataattaataaacctatgagttgtatccaaatattatgagtactactaatttatgagttctcgatatatag |
4460019 |
T |
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| Q |
236 |
gcaatttttgcaagagatttttagtgattaggtttttgaaattaatctcattttcctgacaaa------aagaatcaataacgggttattcaagaaattt |
329 |
Q |
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| T |
4460018 |
gcaatttttgcaagagatttttagtgattaggtttttgaaattaatctcattttcctgacaaatctagtaagaatcaataacgggttattcaagaaattt |
4459919 |
T |
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| Q |
330 |
tatgcatcgaatcttgtttgaatggtatttgagtttagggtttgtgtttgtggtttgaagaaaatgaagatgatgaaattatggtttaccatagtttgca |
429 |
Q |
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| T |
4459918 |
tatgcatcgaatcttgtttgagtggtgtttgagtttagggtttgtgtttgtggtttgaagaaaatgaagatgatgaaattatggtttaccatagtttgca |
4459819 |
T |
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| Q |
430 |
atctgttgaagtttacttgacatt---------gatctcatacttagatggatgaagtaaatagtttggagatgtttggggtatgattgtgattcatttt |
520 |
Q |
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| T |
4459818 |
atctgttgaagtttactcgacattgaggatttagatctcatacatagatggatgaagtaaatagtttggagatgttt-gggtatgattgtgattcatttt |
4459720 |
T |
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| Q |
521 |
tcgagaggtttatgtgttggggtaggtattgggtgttat |
559 |
Q |
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| T |
4459719 |
tcgggaggtttatgtgttggggttggtattgggtgttat |
4459681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 4460234 - 4460178
Alignment:
| Q |
20 |
ctcctcctcctcgtccatgatgctgatgaatccagagcaccagaattagcacgatgg |
76 |
Q |
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| T |
4460234 |
ctcctcctcctcgtccatgatgctgatgaatccagggcaccagaattagcacgatgg |
4460178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 23574 - 23634
Alignment:
| Q |
380 |
tggtttgaagaaaatgaagatgatgaaattatggtttaccatagtttgcaatctgttgaag |
440 |
Q |
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| T |
23574 |
tggtttgaagaaaaggaagatgatgagagtatggtgtaccatagtttgcaaactgttgaag |
23634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 21309959 - 21310019
Alignment:
| Q |
380 |
tggtttgaagaaaatgaagatgatgaaattatggtttaccatagtttgcaatctgttgaag |
440 |
Q |
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| T |
21309959 |
tggtttgaagaaaaggaagatgatgagagtatggtgtaccatagtttgcaaactgttgaag |
21310019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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