View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_low_86 (Length: 258)
Name: NF19631_low_86
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_86 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 7415141 - 7414915
Alignment:
| Q |
22 |
gtggagcctagacttgctgatcatctttactccctttgagtattttctctacttaggttttgtgtttaataaggttgagaattcaacataattggatttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7415141 |
gtggagcctagacttgctgatcatctttactccctttgagtattttctctacttaggttttgtgtttaataaggttgagaattcaacataattggatttg |
7415042 |
T |
|
| Q |
122 |
tgtgagtttaatgtcatcatacttaattacaagagcgnnnnnnntgtagacatgataatgaagaagtatatgatgttggattgttggaatttacatttag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7415041 |
tgtgagtttaatgtcatcatacttaattacaagagcaaaaaaaatgtaggcatgataatgaagaaatatatgatgttggattgttggaatttacatttag |
7414942 |
T |
|
| Q |
222 |
taatgagtgtagtagtatatccctttg |
248 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
7414941 |
taatgagtgtagtagtatatccctttg |
7414915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University