View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19631_low_88 (Length: 254)
Name: NF19631_low_88
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_88 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 4001524 - 4001689
Alignment:
| Q |
13 |
aaaatatcaacggatgaataaggaaataagttatcaaattttaaaatcaaaatgtaactgctttttgatattaaaacaaccgcaccattgatggaggaaa |
112 |
Q |
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| T |
4001524 |
aaaatatcaacggatgaataaggaaataagttatcaaattttaaaatcaaaatgtaactgctctttgatattaaaacaaccgcactattgatggaggaaa |
4001623 |
T |
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| Q |
113 |
tatcggagagggaatagagagattcatgactataaattttagttccctatattaacttccttctgg |
178 |
Q |
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| T |
4001624 |
tatcggagagggaatagagagattcatgactataaattttagttctctatgttaacatccttctgg |
4001689 |
T |
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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 32724184 - 32724326
Alignment:
| Q |
32 |
aaggaaataagttatcaaattttaaaatcaaaatgtaactgctttttgatattaaaacaaccgcaccattgatggaggaaatatcggagagggaatagag |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||| ||| || || || ||||| ||||||| || || |
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| T |
32724184 |
aaggaaataagttatcaaattttaaaatcaaaatgtaactgatctttcatatt-aaacaaccgcagtatttataga-gagatatcagagaggggat--ag |
32724279 |
T |
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| Q |
132 |
agattcatgactataaattttagttccctatattaacttccttctgg |
178 |
Q |
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|||||||||| |||||||||| ||||||||||||||||| ||||||| |
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| T |
32724280 |
agattcatgagtataaattttggttccctatattaactttcttctgg |
32724326 |
T |
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