View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19631_low_97 (Length: 245)
Name: NF19631_low_97
Description: NF19631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19631_low_97 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 4015420 - 4015229
Alignment:
| Q |
5 |
agtagagatttcggctttgcctttggatgtgacaattcaactggagcttataaagtggtggcgttctgtaaacgagagacaacatcagatgtgaaagttc |
104 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4015420 |
agtagagatttcgactttgcctttggatgtgataattcaactggagcttataaagtggtggcgttctgtaaacgagagacaacatcagatgtgaaagttc |
4015321 |
T |
|
| Q |
105 |
tcaacttgggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4015320 |
tcaacttgggtgttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg |
4015229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 4570561 - 4570741
Alignment:
| Q |
19 |
ctttgcctttggatgtgacaattcaactggagcttataaagtggtggcgttctgtaaacgagagacaacatcagatgtgaaagttctcaacttg---ggt |
115 |
Q |
| |
|
||||| |||||||||||| ||||||| | | |||||||||||||||||| |||||| | ||||||| ||||||| || | ||||||||| ||| ||| |
|
|
| T |
4570561 |
ctttggctttggatgtgataattcaaacgaaacttataaagtggtggcgtactgtaatcaagagacagcatcagaggtcagagttctcaatttgggtggt |
4570660 |
T |
|
| Q |
116 |
gttgatgtttggagaaacattgaaagttttcctgttgttcttgaccacgaacatgtgtgtttgagtggtactataaactgg |
196 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||| |||||||| |||| ||| ||||| ||||||||| ||| | |||||| |
|
|
| T |
4570661 |
gatgatgtttggagaaatattgaaagttttcctactgttcttggccacaaacctgtgtatttgagtggcactgtgaactgg |
4570741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 4017225 - 4017083
Alignment:
| Q |
9 |
gagatttcggctttgcctttggatgtgacaattcaactggagcttataaagtggtggcgttctgtaaacgagagacaacatcagat------gtgaaagt |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||| | |||||||||||||||| | | || | || |||||||||||||| |||||||| |
|
|
| T |
4017225 |
gagatttcggctttgcatttggatgtgataattcaactgcaacttataaagtggtggcatacggtgatcggaagacaacatcagattcagaggtgaaagt |
4017126 |
T |
|
| Q |
103 |
tctcaacttgggtgttgatgtttggagaaacattgaaagtttt |
145 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||| |||||| |
|
|
| T |
4017125 |
tctcaatttgggtgatgatgtttggagaaatattgacagtttt |
4017083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 21855786 - 21855725
Alignment:
| Q |
90 |
cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt |
151 |
Q |
| |
|
|||| |||| |||| ||||| |||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
21855786 |
cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt |
21855725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 21855869 - 21855820
Alignment:
| Q |
19 |
ctttgcctttggatgtgacaattcaactggagcttataaagtggtggcgt |
68 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||||||||||||||||| |
|
|
| T |
21855869 |
ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt |
21855820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 24331302 - 24331241
Alignment:
| Q |
90 |
cagatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctgtt |
151 |
Q |
| |
|
|||| |||| |||| ||||| |||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
24331302 |
cagaggtgagagttatcaacatgggtgatgatgtttggagaaacatcgaaagttttcctgtt |
24331241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 24331385 - 24331336
Alignment:
| Q |
19 |
ctttgcctttggatgtgacaattcaactggagcttataaagtggtggcgt |
68 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||||||||||||||||| |
|
|
| T |
24331385 |
ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt |
24331336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 29866911 - 29866968
Alignment:
| Q |
92 |
gatgtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcctg |
149 |
Q |
| |
|
||||||| ||||||||| || |||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
29866911 |
gatgtgagagttctcaatttcggtgatgatcgttggagaaatattgaaagttttcctg |
29866968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 29880931 - 29880984
Alignment:
| Q |
95 |
gtgaaagttctcaacttgggtgttgatgtttggagaaacattgaaagttttcct |
148 |
Q |
| |
|
|||| ||||||||| | |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
29880931 |
gtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagttttcct |
29880984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University