View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19632_high_10 (Length: 207)
Name: NF19632_high_10
Description: NF19632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19632_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 3702317 - 3702206
Alignment:
| Q |
82 |
tgaattctgaaggtttgatatttatataatcaaaagggctattttgtattatttttccaacaaatattaaatatcattactctccttggaaagttttgat |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702317 |
tgaattctgaaggtttgatatttatataatcaaaagggctattttgtattatttttccaacaaatattaaatatcattactctccttggaaagttttgat |
3702218 |
T |
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| Q |
182 |
ttctcttctgtg |
193 |
Q |
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|||||||||||| |
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| T |
3702217 |
ttctcttctgtg |
3702206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 3702437 - 3702367
Alignment:
| Q |
18 |
aatggttcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattc |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3702437 |
aatggttcataagtttctgtgtaaactcattatattgttagatttttggtatttgattgtgttttgaattc |
3702367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 6601226 - 6601337
Alignment:
| Q |
82 |
tgaattctgaaggtttgatatttatataatcaaaagggctattttgtattatttttccaacaaatattaaatatcattactctccttggaaagttttgat |
181 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
6601226 |
tgaattctgaaggtttaatatttatataatcaaaagggctattttgtattatttttcacacaagtattaaatatcattactctccttggaaagttttgat |
6601325 |
T |
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| Q |
182 |
ttctcttctgtg |
193 |
Q |
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|||||||||||| |
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| T |
6601326 |
ttctcttctgtg |
6601337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 6601112 - 6601176
Alignment:
| Q |
24 |
tcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattc |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6601112 |
tcataagtttctgtgtaaactcattatattgttagatttttggtatttgactgtgttttgaattc |
6601176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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