View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19632_low_4 (Length: 338)
Name: NF19632_low_4
Description: NF19632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19632_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 44020272 - 44020365
Alignment:
| Q |
231 |
gttattcaattcttattcttcttctttgtatctcctttaacatagtgtagcataaaccaaaactcttatattctgtatccggatatcataattg |
324 |
Q |
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| T |
44020272 |
gttattcaattcttattcttcttctttgtatctcctttaacatagtgtagcataaaccaaaactcttaaattctgtatccggatatcataattg |
44020365 |
T |
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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 44019883 - 44019966
Alignment:
| Q |
72 |
caaaaatagcaatgcattatctatattttaagagcaatttttcaagtatcagaattggttttgcatgcaaatgcaaagagatgaa |
156 |
Q |
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| T |
44019883 |
caaaaatagcaatgcattatctatattt-aagagcaatttttcaagtatcagaattggttttgcatgcaaatgcaaagagatgaa |
44019966 |
T |
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