View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19632_low_5 (Length: 301)
Name: NF19632_low_5
Description: NF19632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19632_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 34 - 285
Target Start/End: Complemental strand, 33719995 - 33719750
Alignment:
| Q |
34 |
taaatacaaacatgcatgataaaagaaaagaagataaacatatgaaactttcgaagcacatacaaatacatcnnnnnnnttgtgataaacaagagattac |
133 |
Q |
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| T |
33719995 |
taaatacgaatatgcataataaaagaaaagaagatcaacatatgaaactttcgaagcacatacaaatacatcaaaaaaattgtgataaacaagagattac |
33719896 |
T |
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| Q |
134 |
tcaagaatagcagcaattccaatgaaattacaagtctgtttacaaactacttttcattgacaacaaatttaatacaacaacagaatactgtaaattttgt |
233 |
Q |
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| T |
33719895 |
tcaagaatggca---atttcaatgaaattacaagtctgtttacaacctacttttcattgacaacaaatttaatacaaca---gaatactgtaaattttgt |
33719802 |
T |
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| Q |
234 |
atctatattattgttcaaggcaatacaaaacaaaggataaacccttgtcttt |
285 |
Q |
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| T |
33719801 |
atctatattattgttcaaggcaatacaaaacaaaggataaacccttgtcttt |
33719750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 21233763 - 21233720
Alignment:
| Q |
231 |
tgtatctatattattgttcaaggcaatacaaaacaaaggataaa |
274 |
Q |
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| T |
21233763 |
tgtatctatcttattgttcgaggaaatacaaaacaaaggataaa |
21233720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 21243851 - 21243893
Alignment:
| Q |
232 |
gtatctatattattgttcaaggcaatacaaaacaaaggataaa |
274 |
Q |
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| T |
21243851 |
gtatctatcttattgttcaaggcaacacaaaacaaaagataaa |
21243893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 21303687 - 21303614
Alignment:
| Q |
16 |
aatataggacctaaggaataaatacaaacatgcatgat-aaaagaaaagaagataaacatatgaaactttcgaa |
88 |
Q |
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|||| |||| |||| |||||||||||||||||||| || ||||||| | || | ||||||||||||||||||| |
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| T |
21303687 |
aataaaggaactaaagaataaatacaaacatgcattataaaaagaagataaactgaacatatgaaactttcgaa |
21303614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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