View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19632_low_9 (Length: 240)
Name: NF19632_low_9
Description: NF19632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19632_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 1250682 - 1250893
Alignment:
| Q |
18 |
cttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcctaaatgtgtgcaatgacgctcgaagatcggccac |
117 |
Q |
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| T |
1250682 |
cttctatgttaatattagatcatgtgtgattcaagacatttaagaactgttattgactttggctcctaaatgtgtgcaatggcgctcgaagatcggccac |
1250781 |
T |
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| Q |
118 |
aactatgtggagcaacatccttggggatgggtggattcggtaaaacatcgagga-ggtacgtacgtttctacacattttgttcttatgttttcacttgat |
216 |
Q |
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| T |
1250782 |
aactatgtggagcaacatccttggggatgggtggattcggtaaaacattgaggatcgtacgtacatttctacacattttgttcttatgttttcacttggt |
1250881 |
T |
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| Q |
217 |
aacacctatgct |
228 |
Q |
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| T |
1250882 |
aacatctatgct |
1250893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 8269442 - 8269587
Alignment:
| Q |
18 |
cttctatcttaatattagatcatgtgtgattcaagaaatttaagaactgttattgactttggctcctaaatgtgtgcaatgacgctcgaagatcggccac |
117 |
Q |
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| T |
8269442 |
cttctattttaatat-agatcatgtgggattcaagacatttaggaactgttattgactttggctcccaaatgcatgcaatgacggttgaagatcggccac |
8269540 |
T |
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| Q |
118 |
aactatgtggagcaacatccttggggatgggtggattcggtaaaaca |
164 |
Q |
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| T |
8269541 |
aactatgtggaacaacatccttggggatgggcggattcggtaaaaca |
8269587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 8287812 - 8287898
Alignment:
| Q |
91 |
gtgcaatgacgctcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaacatcgaggaggtacg |
177 |
Q |
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| T |
8287812 |
gtgcaatgacagtcgaagatcagtcacaactatgtggatcgacatccttaggcatgggtggattcggtaaaacatcgaggaggtacg |
8287898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 8275035 - 8275072
Alignment:
| Q |
177 |
gtacgtttctacacattttgttcttatgttttcacttg |
214 |
Q |
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| T |
8275035 |
gtacatttctacacattttgttcttctgttttcacttg |
8275072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 26585307 - 26585364
Alignment:
| Q |
106 |
aagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaaac |
163 |
Q |
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| T |
26585307 |
aagatcggccacaactatgtggagcaacaaccttgggaatgggtggattcggtaaaac |
26585364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 17231896 - 17231932
Alignment:
| Q |
177 |
gtacgtttctacacattttgttcttatgttttcactt |
213 |
Q |
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| T |
17231896 |
gtacatttctacacattttgttcttctgttttcactt |
17231932 |
T |
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