View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19633_high_1 (Length: 521)
Name: NF19633_high_1
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19633_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Original strand, 25689586 - 25690074
Alignment:
| Q |
18 |
cggattatatatatttgttaaaacacaagaggatttattgcagcagcatgtggaaaacttgatgctgtcttgcaaaattcttcaagaggagtaggaagtg |
117 |
Q |
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| T |
25689586 |
cggattatatatatttgttaaaacacaagaggatttattgcagcagtatgtggaaaacttgatgctgtcttgcaaaattcttcaagaggagtaggaagtg |
25689685 |
T |
|
| Q |
118 |
atatcccagcagtcaaaacatatcaaaatggatcagcaacaaaaccacaagcttacataccagaatatgtatatggcaatggcaatatcaatggaaatgg |
217 |
Q |
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| T |
25689686 |
atatcccagcagtcaaaacatatcaaaatggatcagcaacaaaaccacaagcttacataccagaatatgtatatggcaatggcaatatcaatggaaatgg |
25689785 |
T |
|
| Q |
218 |
atttcattagtaaatgttataactactactggtgtttacttgatgctttagaaatttttaggttaattgattaaatatggtgtttcaggtctttgttaag |
317 |
Q |
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| T |
25689786 |
atttcattagtaaatgttataactactactggtgtttacttgatgctttagaaatttttaggttaattgattaaatatggtgtttcaggtctttgttaag |
25689885 |
T |
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| Q |
318 |
agaagttgtttgtacagtaaaaaattaaagttggtaggaataaagttaaggatgatacagacagagatgagtattgatcgcggcctttttaatggggata |
417 |
Q |
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| T |
25689886 |
agaagttgtttgtacagtaaaaaattaaagttggtaggaatagagttaaggatgatacagacagagatgagtattgatcgcggcctttttaatggggata |
25689985 |
T |
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| Q |
418 |
gttcttttaactag--nnnnnnnnnaaatgtttctgagtttggaactcttcatgtaatggaactcttgatgttttggtgcaatactact |
504 |
Q |
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| T |
25689986 |
gctcttttaactagtttttttttttaaatgtttctgagtttggaactcttcatgtaatggaactcttgatgttttggtgcaatactact |
25690074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 190 - 470
Target Start/End: Original strand, 29945771 - 29946058
Alignment:
| Q |
190 |
atggcaatggcaatatcaatggaaatggatttcattagtaaatgttataactactactg---gtgtttacttgatgctttagaaatttttaggttaattg |
286 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |||||||||| |||||||||| |
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| T |
29945771 |
atggaaatggcaatatcaatggaaatggatttcattactaaatgatataactactactactagtgtttacttgatgtgttagaaatttcaaggttaattg |
29945870 |
T |
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| Q |
287 |
attaaatatggtgtttcaggtctttgttaagagaagttgtttgtacagt-aaaaaattaaagttggtaggaataaag--ttaaggatgatacagacaga- |
382 |
Q |
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| T |
29945871 |
gttaaatatggtgtttgagggctttcttaagagaagttgtttgtacagtcaaaaactgaaagttggtaggaatagagttttaaggatgatacagacagag |
29945970 |
T |
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| Q |
383 |
--gatgagtattgatcgcggcctttttaatggggatagttcttttaactagnnnnnnnnnaaatgtttctgagtttggaactcttcatgt |
470 |
Q |
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| T |
29945971 |
atgatgagcattgatcccggcctttttaatggggctagctcttttaacta--agttttttaagtgtttctgagtttggaactcttcatgt |
29946058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 29945594 - 29945775
Alignment:
| Q |
37 |
aaaacacaagaggatttattgcagcagcatgtggaaaacttgatgctgtcttgcaaaattcttcaagaggagtaggaagtgatatcccagcagtcaaaac |
136 |
Q |
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||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||| |
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| T |
29945594 |
aaaacacaacagggtttattgcagcagcatgcggaaaacttgatgctgtcttacaacactcttcaagaggagtaggaagtgatatccgagcagtcaaaac |
29945693 |
T |
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| Q |
137 |
atatcaaaatggatcagcaacaaaaccacaagcttacataccagaatatgtatatggcaatggcaatatcaatggaaatgga |
218 |
Q |
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| T |
29945694 |
atatcagaatggatcagcaacaaagccacatgcttattggccagaacatgtatatggcaatggcaatatcaatggaaatgga |
29945775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 511
Target Start/End: Complemental strand, 5588922 - 5588776
Alignment:
| Q |
363 |
ttaaggatgatacagacagagatgagtattgatcgcggcctttttaatggggatagttcttttaactagnnnnnnnnnaaatgtttctgagtttggaact |
462 |
Q |
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|||||||||||||||||||||||||| ||||||| || || ||||||||||| || |||| ||||||| | ||||| |||| |||||||| |
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| T |
5588922 |
ttaaggatgatacagacagagatgagcattgatcccgacccttttaatggggctaattctcttaactaagttttttt--agtgtttttgaggttggaact |
5588825 |
T |
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| Q |
463 |
cttcatgtaatggaactcttgatgttttggtgcaatactactgcctttg |
511 |
Q |
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|||||||||||||||||| ||| ||||| |||||||| ||||| ||||| |
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| T |
5588824 |
cttcatgtaatggaactcctgacgttttagtgcaatagtactgtctttg |
5588776 |
T |
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