View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19633_high_3 (Length: 423)
Name: NF19633_high_3
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19633_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 404
Target Start/End: Complemental strand, 9071107 - 9070718
Alignment:
| Q |
12 |
atcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtcca |
111 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071107 |
atcatcacaagatcaa---tgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtcca |
9071011 |
T |
|
| Q |
112 |
atcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9071010 |
atcaaattccatgtctctgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaatt |
9070911 |
T |
|
| Q |
212 |
catcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatca |
311 |
Q |
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| T |
9070910 |
catcatttcgaccttaccggtttgattctgaactggatatcaaaatcttcttcttcaactgcttttcagttaggaaacaacacttgagaaaccaatatca |
9070811 |
T |
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| Q |
312 |
gacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaagatatcgttgatttggaccttgtatcttgtac |
404 |
Q |
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| T |
9070810 |
gacatcccaagagtcacaagatatgatcacttgtccaatttatgttgctgattcggacgaagatatcgttgatttggaccttctatcttgtac |
9070718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 353
Target Start/End: Complemental strand, 8862938 - 8862628
Alignment:
| Q |
46 |
gagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctctgatattgactacgaat |
145 |
Q |
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| T |
8862938 |
gagttttgcctatattgtactgaaaacaaggaaaccatgatggtcctctctaccacttcaggtccaatcaaattccgtgtatattacatagactacgaat |
8862839 |
T |
|
| Q |
146 |
cacactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaacc |
245 |
Q |
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|| || || ||| | ||||| ||||||||| |||| ||||||||| ||| ||| ||||| |||||||||| ||||||||| ||| | | |||| |
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| T |
8862838 |
caaaccgaatttcagtgatggacccggacaattgcattcctaaaaagtttctgaaacttaacaactcatcatttctaccttaccgattttttccacaacc |
8862739 |
T |
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| Q |
246 |
ggatat--caaaatgttctt-cttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcact |
342 |
Q |
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| | |||||| |||| |||||| ||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||| |
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| T |
8862738 |
aggaacgacaaaattgtctttcttcaattgctcttcagttaggaaacaacacttgagaaaccatgatcaaacatcccaagagtcgcaagatatgatcacc |
8862639 |
T |
|
| Q |
343 |
tgtccaattta |
353 |
Q |
| |
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|||||| |||| |
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|
| T |
8862638 |
tgtccagttta |
8862628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 9087154 - 9087066
Alignment:
| Q |
265 |
ttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
353 |
Q |
| |
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|||||||||||||| |||| ||||||||| ||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||| |
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| T |
9087154 |
ttcaactgctcttcggttaagaaacgacatttgagaaaccaatatcagataaacaaagattcacaagatatgatcacttgtccaattta |
9087066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 260 - 365
Target Start/End: Complemental strand, 9126305 - 9126200
Alignment:
| Q |
260 |
tcttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaatttatgttgc |
359 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||| | |||| || ||||| |||||||||||||||||| ||||||||||| | ||| |
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| T |
9126305 |
tcttcttcaactgctcttcggttaggaaacgacacctgagaaactacgatcaattattccaagggtcacaagatatgatcacatgtccaatttacgctgc |
9126206 |
T |
|
| Q |
360 |
tgattc |
365 |
Q |
| |
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|||||| |
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|
| T |
9126205 |
tgattc |
9126200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 353
Target Start/End: Complemental strand, 8866818 - 8866497
Alignment:
| Q |
29 |
aatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtccaatcaaattccatgtctc |
128 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||| |||| ||||| |||||||| || | |||||| ||||||||||| ||| |||| ||| |
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| T |
8866818 |
aatgtgtttatcct---gagttttgcctatattgtactcaaaacaagaacaccatgatggtgttatctaccacttcaggtccattcatattctttgtaga |
8866722 |
T |
|
| Q |
129 |
tgatattgactacgaatcacactcgatgtcaatatcagacccagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttac |
228 |
Q |
| |
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| | || |||||||||||| || | ||||| || ||||||||||||||| || | |||| || ||| ||| ||||| | ||||||| ||||||| |
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| T |
8866721 |
ttacatagactacgaatcaaaccaactttcaatttcggacccagacaattgcatttcggaaaaaattctgaaacttaacaagacctcatttccaccttac |
8866622 |
T |
|
| Q |
229 |
cggtttgattctgaaccggatatcaaaatgttctt-cttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtca |
327 |
Q |
| |
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|| ||| |||| ||| | ||| |||||| |||| |||||| || |||||| ||| |||||||||| |||||||| || |||| |||| ||| |||| |
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| T |
8866621 |
cgattttattcagaatca-ataacaaaatcatctttcttcaattgttcttcatttaagaaacgacacctgagaaacgaagatcaatcatctcaacggtca |
8866523 |
T |
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| Q |
328 |
caagatatgatcacttgtccaattta |
353 |
Q |
| |
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|||||||||||||| ||||||||||| |
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| T |
8866522 |
caagatatgatcacctgtccaattta |
8866497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 9087410 - 9087308
Alignment:
| Q |
12 |
atcatcacaagatcaacaatgtgtttatcctaaagagttctgcctatattgtactgaaaataagaaaaccatgatagttctctctacctcttcaggtcca |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| ||| ||||||||||| ||||||||| ||||||||| || |||||| || |||||||||| |
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| T |
9087410 |
atcatcacaagatcaa---tgtgtttatcct---gagttttgcttatattgtactaaaaataagagaaccatgattgtgctctcttccaattcaggtcca |
9087317 |
T |
|
| Q |
112 |
atcaaattc |
120 |
Q |
| |
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||||||||| |
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|
| T |
9087316 |
atcaaattc |
9087308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 8980134 - 8980043
Alignment:
| Q |
262 |
ttcttcaactgctcttcagttaggaaacgacacttgagaaaccaatatcagacatcccaagagtcacaagatatgatcacttgtccaattta |
353 |
Q |
| |
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||||| ||||||||||| ||| |||||| |||| ||||||||||| ||||| ||| |||| ||| |||| ||||||| || ||||||||||| |
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| T |
8980134 |
ttctttaactgctcttctgttgggaaacaacacctgagaaaccaagatcagtcattccaaaagttacaaaatatgattacctgtccaattta |
8980043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 9109116 - 9108990
Alignment:
| Q |
170 |
cagacaattgccttccaaaaaagtttttgatactcaacaattcatcatttcaaccttaccggtttgattctgaaccggatatcaaaatgttcttcttcaa |
269 |
Q |
| |
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||||||||||||||| ||||| |||||| || ||||||| |||||||||| ||||||| | ||| |||| ||| | |||| | ||| | ||||| ||| |
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| T |
9109116 |
cagacaattgccttcaaaaaatgttttt-atgctcaacagttcatcattttgaccttacagattttattcagaatcaaatataataatttccttctccaa |
9109018 |
T |
|
| Q |
270 |
ctgctcttcagttaggaaacgacacttg |
297 |
Q |
| |
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|||||||||||||| |||||| |||||| |
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|
| T |
9109017 |
ctgctcttcagttaagaaacggcacttg |
9108990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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