View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19633_high_6 (Length: 319)
Name: NF19633_high_6
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19633_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 319
Target Start/End: Original strand, 4459388 - 4459701
Alignment:
| Q |
6 |
ggacatcatcaaaaggcacccat--ctactcctggtccactgaagaaaaccataactagcccaaaaacccagacgaaaaatccttaaggccgtcgacaga |
103 |
Q |
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| T |
4459388 |
ggacatcataaaaagacacccatatctactcctggtccactgaagaaaaccataactagcccaaaaacccagacgaaaaatccttaaggcagtcgacaga |
4459487 |
T |
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| Q |
104 |
tgaagtgctaactnnnnnnntatatatcgaaaagggacacaactcgaaaacaattcaaaatcgaaaccacccaatattgaaaacaacctaaaatctgcaa |
203 |
Q |
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| T |
4459488 |
tgaagtgctaa----aaatatatatatcgaaaagggacacaactcgaaaacaattcaaaatcgaaaccacccaaaattgaaaacaacctaaaatctgcaa |
4459583 |
T |
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| Q |
204 |
gagtttgcggg--catagatggactcatatgggaggtcaccacatacaaacactaatagaagataccaaaaatagccacacaaccccattcaacaaaata |
301 |
Q |
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| T |
4459584 |
gagtttgcggtgacatagatggactcatatgggaggtcaccacattcaaacactaatagaagataccaaaaatagccacacaaccccattcaacaaaata |
4459683 |
T |
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| Q |
302 |
acacccaatacctacccc |
319 |
Q |
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| T |
4459684 |
acacccaataccaacccc |
4459701 |
T |
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