View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19633_high_8 (Length: 305)
Name: NF19633_high_8
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19633_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 287
Target Start/End: Complemental strand, 25755871 - 25755594
Alignment:
| Q |
10 |
aagaatatatgtgagaaaaatgacggcctcttccaaaccaaattgtgatggttctgattgttatttagttggccttttgagtgattattgtcacattgca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25755871 |
aagaatatatgtgagaaaaatgacggcctcttccaaaccaaattgtgatggttctgattgttatttagttggccttttgagtgattattgtcacattgca |
25755772 |
T |
|
| Q |
110 |
atttataaactctttgaaaagtcgtggactatagttgaaccagataaggattcagggacttattttacggacatagaaattattggtacaaaattatatg |
209 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
25755771 |
atttataaactctttgaaaagtcatggactatagttgagccagataaggattcagggacttattttactgacatagaaattattggtagaaaattatatg |
25755672 |
T |
|
| Q |
210 |
taatcggctcatcgtcaaattcaatattggtttatgatctgaaagactccactaatggacctccgaaggctcaagtgt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25755671 |
taatcggctcatcgtcaaattcaatattggtttatgatctgaaagactccactaatggacctccgaaggctcaagtgt |
25755594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 25733423 - 25733152
Alignment:
| Q |
16 |
atatgtgagaaaaatgacggcctcttccaaaccaaattgtgatggttctgattgttatttagttggccttttgagtgattattgtcacattgcaatttat |
115 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25733423 |
atatgtgagtaaaatgacggcttcttccaaaccaaattgtgatggttctgattgctatttagctggccttttgagtgattattgtcacattgcaatttat |
25733324 |
T |
|
| Q |
116 |
aaactctttgaaaagtcgtggactatagttgaaccagataaggattcagggacttattttacggacatagaaattattggtacaaaattatatgtaatcg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25733323 |
aaactctttgaaaagtcgtggactatagttgaaccagataaagattcagggacttattttacggacatagaaattattggtacaaaattatatgtaatag |
25733224 |
T |
|
| Q |
216 |
gctcatcgtcaaattcaatattggtttatgatctgaaagactccactaatggacctccgaaggctcaagtgt |
287 |
Q |
| |
|
|||||| |||| |||| || |||||||||||||| ||||| ||||| |||| ||||| |||| || |||||| |
|
|
| T |
25733223 |
gctcattgtcagattctattttggtttatgatcttaaagattccaccaatgcacctcggaagcctgaagtgt |
25733152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 25741124 - 25740853
Alignment:
| Q |
16 |
atatgtgagaaaaatgacggcctcttccaaaccaaattgtgatggttctgattgttatttagttggccttttgagtgattattgtcacattgcaatttat |
115 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
25741124 |
atatgtgacaaaactgacggcctcttccaaaccaaattgtgatggttctgattgctatttagctggccttttcagtgattattgtcacatagcaatttat |
25741025 |
T |
|
| Q |
116 |
aaactctttgaaaagtcgtggactatagttgaaccagataaggattcagggacttattttacggacatagaaattattggtacaaaattatatgtaatcg |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25741024 |
aaactctttgaaaagtcatggactatagttgagtcagataaggattcagggacttattttacggacatagaaattattggtacaaaattatatgtaatag |
25740925 |
T |
|
| Q |
216 |
gctcatcgtcaaattcaatattggtttatgatctgaaagactccactaatggacctccgaaggctcaagtgt |
287 |
Q |
| |
|
|||||| |||| |||| || |||||||||||||| ||||| ||||| |||| ||||| ||||||| |||||| |
|
|
| T |
25740924 |
gctcattgtcagattctattttggtttatgatcttaaagattccaccaatgcacctcggaaggctgaagtgt |
25740853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 25747294 - 25747035
Alignment:
| Q |
16 |
atatgtgagaaaaatgacggcctcttccaaaccaaattgtgatggttctgattgttatttagttggccttttgagtgattattgtcacattgcaatttat |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
25747294 |
atatgtgagtaaaatgacggcctcttccaaaccaaattgtgatggatctgattgctatttagctggccttttgagtgattatt---acattgcaatttat |
25747198 |
T |
|
| Q |
116 |
aaactctttgaaaagtcgtggactatagttgaaccagataaggattcagggacttattttacggacatagaaattattggtacaaaattatatgtaatcg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25747197 |
aaactctttgaaaagtcgtggactatagttgaaccagataaggattcagggacttattttatggacatagaaattattggtacaaaattatatgtaaaag |
25747098 |
T |
|
| Q |
216 |
gctcatcgtcaaattcaatattggtttatgatctgaaagactccactaatggacctccgaaggctcaagtgt |
287 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
25747097 |
gctca---------tcattattggtttatgatctgaaagactccactaatggacctccaaaggctgaagtgt |
25747035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 25763809 - 25763543
Alignment:
| Q |
19 |
tgtgagaaaaatgacggcctcttccaaaccaaattgtgatggttctgattgttatttagttggccttttgagtgattattgtcacattgcaatttataaa |
118 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||||||| | ||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
25763809 |
tgtgaaaaaaatggtggcctcttccaaaccaaactgtgatggttcggattgttatttagtctgtcttctgactgattgttgtcacattgcaatttataaa |
25763710 |
T |
|
| Q |
119 |
ctctttgaaaagtcgtggactatagttgaaccagataaggattcagggacttattttacggacatagaaattattggtacaaaattatatgtaatcggct |
218 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
25763709 |
ctctttgacaaggaatggactatagttgagtcagataaggattcagcgactaattttacggacatagaaattatcagtacaaaattatatgtaacaaact |
25763610 |
T |
|
| Q |
219 |
catcgtcaaattcaatattggtttatgatctgaaagactccactaatggacctccgaaggctcaagt |
285 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||| |||| |
|
|
| T |
25763609 |
catcctcaaattctatattggtttatgatcttaaagactcaactaatggacctccaaaggctgaagt |
25763543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 34 - 287
Target Start/End: Original strand, 8294655 - 8294908
Alignment:
| Q |
34 |
ggcctcttccaaaccaaattgtgatggttctgattgttatttagttggccttttgagtgattattgtcacattgcaatttataaactctttgaaaagtcg |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
8294655 |
ggcctcttccaaaccaaattgtgatggttctgattgttatttagtcggtcttttgagtgatttttgccacattgtaatttataaactctttgaccagtca |
8294754 |
T |
|
| Q |
134 |
tggactatagttgaaccagataaggattcagggacttattttacggacatagaaattattggtacaaaattatatgtaatcggctcatcgtcaaattcaa |
233 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||| ||| | |||||||||||||||||||| |||| || | |||| ||| |||| | |
|
|
| T |
8294755 |
tggactatagttgaaccagatagggattcaaagacttattttatggatgtggaaattattggtacaaaattgtatgcaagtaacccatcctcatattcta |
8294854 |
T |
|
| Q |
234 |
tattggtttatgatctgaaagactccactaatggacctccgaaggctcaagtgt |
287 |
Q |
| |
|
| || ||||||||||| ||||||||||| ||||||||||| || ||| |||||| |
|
|
| T |
8294855 |
ttttagtttatgatctcaaagactccacaaatggacctccaaaagctaaagtgt |
8294908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 30149103 - 30149372
Alignment:
| Q |
18 |
atgtgagaaaaatgacggcctcttccaaaccaaattgtgatggttctgattgttatttagttggccttttgagtgattattgtcacattgcaatttataa |
117 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
30149103 |
atgtgagcaaaatggtggcctcttccaaaccaaattttgatggttctgattgttatttagtcggtcttttaggtgatgattgtcacattgcaatttataa |
30149202 |
T |
|
| Q |
118 |
actctttgaaaagtcgtggactatagttgaaccagataaggattcagggacttattttacggacatagaaattattggtacaaaattatatgtaatcggc |
217 |
Q |
| |
|
||| ||||| ||||| |||| ||||||||| ||||||||||||||| |||||||||||| || | |||||||||||||| |||| |||||| | | |
|
|
| T |
30149203 |
actttttgataagtcatggattatagttgagccagataaggattcaaggacttattttatagatttggaaattattggtacgcaattgtatgtatgtgac |
30149302 |
T |
|
| Q |
218 |
tcatcgtcaaattcaatattggtttatgatctgaaagactccactaatggacctccgaaggctcaagtgt |
287 |
Q |
| |
|
|| ||| |||| ||||||||||||||||| |||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
30149303 |
gggtcctcagattctatattggtttatgatctcaaagactccattaatggacctccaaaggctaaagtgt |
30149372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 83 - 287
Target Start/End: Original strand, 30153907 - 30154111
Alignment:
| Q |
83 |
cttttgagtgattattgtcacattgcaatttataaactctttgaaaagtcgtggactatagttgaaccagataaggattcagggacttattttacggaca |
182 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||| |||||||||||| ||| |
|
|
| T |
30153907 |
cttttgagtgatgattgtcacattgcaatttataaactttttgataagtcgtggattatagttgagccagataaggattcaaggacttattttatggatg |
30154006 |
T |
|
| Q |
183 |
tagaaattattggtacaaaattatatgtaatcggctcatcgtcaaattcaatattggtttatgatctgaaagactccactaatggacctccgaaggctca |
282 |
Q |
| |
|
| |||||||||||||||||||| ||||| | | | || ||| ||| |||| ||||||||||| ||||||||| |||||||||||| |||||| | |
|
|
| T |
30154007 |
tggaaattattggtacaaaattgtatgttagtgaccggtcctcagattatgtattcgtttatgatctcaaagactccgttaatggacctccaaaggctaa |
30154106 |
T |
|
| Q |
283 |
agtgt |
287 |
Q |
| |
|
||||| |
|
|
| T |
30154107 |
agtgt |
30154111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 287
Target Start/End: Original strand, 30155527 - 30155704
Alignment:
| Q |
110 |
atttataaactctttgaaaagtcgtggactatagttgaaccagataaggattcagggacttattttacggacatagaaattattggtacaaaattatatg |
209 |
Q |
| |
|
||||||||||| ||||| |||||||||| ||||||||| ||||||||||||||| |||||||||||| || | |||||||||||||||||||| |||| |
|
|
| T |
30155527 |
atttataaactttttgataagtcgtggattatagttgagccagataaggattcaaggacttattttatagatgtggaaattattggtacaaaattgtatg |
30155626 |
T |
|
| Q |
210 |
taatcggctcatcgtcaaattcaatattggtttatgatctgaaagactccactaatggacctccgaaggctcaagtgt |
287 |
Q |
| |
|
|| | | || ||| |||| ||||||||||||||||| |||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
30155627 |
tatgtgacgggtcctcagattctatattggtttatgatctcaaagactccattaatggacctccaaaggctaaagtgt |
30155704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 30153840 - 30153884
Alignment:
| Q |
34 |
ggcctcttccaaaccaaattgtgatggttctgattgttatttagt |
78 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30153840 |
ggcctcttccaaaccaaattgtgacggttctgattgttatttagt |
30153884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University