View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19633_low_14 (Length: 232)
Name: NF19633_low_14
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19633_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 26722132 - 26721920
Alignment:
| Q |
1 |
gaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtttttgagtactgagagcattgatggaaattac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
26722132 |
gaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaattac |
26722033 |
T |
|
| Q |
101 |
acaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgcagaacctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26722032 |
acaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgtagaacctat |
26721933 |
T |
|
| Q |
201 |
aaagtgtagatag |
213 |
Q |
| |
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||||||||||||| |
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| T |
26721932 |
aaagtgtagatag |
26721920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 45116790 - 45116989
Alignment:
| Q |
1 |
gaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtttttgagtactgagagcattgatggaaattac |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
45116790 |
gaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagagcattgatggaaattac |
45116889 |
T |
|
| Q |
101 |
acaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgcagaacctat |
200 |
Q |
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| T |
45116890 |
acaacaaatagagtcttaaaccatttt-------------ctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgcagaacctat |
45116976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 2987588 - 2987389
Alignment:
| Q |
1 |
gaagaaaaaattaatttgagaaggaatgatgccttttggttttgtgattatgagaattggagttttgtttttgagtactgagagcattgatggaaattac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
2987588 |
gaagaaaaaattaatttgagaaggaatgatgccttttggtttcgtgattatgagaattggagttttgtctttgagtagtgagaacattgatggaaattac |
2987489 |
T |
|
| Q |
101 |
acaacaaatagagtcttaaaccattttctcaaattacaacctcaaatcataatccaaggctcatggtttttcttctttgaaccatatttgcagaacctat |
200 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2987488 |
acaacaaatagagtattaaaccattttctc-------------aaatcataatccaaggctcatggtttttcttctttgaaccatatttgcagaacctat |
2987402 |
T |
|
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