View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19633_low_19 (Length: 213)

Name: NF19633_low_19
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19633_low_19
NF19633_low_19
[»] chr4 (21 HSPs)
chr4 (1-208)||(12774010-12774224)
chr4 (1-71)||(8846529-8846599)
chr4 (106-207)||(39706303-39706405)
chr4 (108-208)||(8846359-8846460)
chr4 (1-65)||(43198446-43198510)
chr4 (92-185)||(52243194-52243291)
chr4 (111-207)||(15551821-15551918)
chr4 (106-185)||(13866-13946)
chr4 (105-185)||(12288222-12288305)
chr4 (1-65)||(13744-13808)
chr4 (109-176)||(16596683-16596751)
chr4 (106-185)||(43198568-43198650)
chr4 (106-207)||(44615289-44615390)
chr4 (155-188)||(14053366-14053399)
chr4 (135-207)||(12397-12468)
chr4 (135-207)||(1837599-1837670)
chr4 (149-185)||(6190488-6190524)
chr4 (135-207)||(15118442-15118513)
chr4 (149-185)||(17046513-17046549)
chr4 (135-207)||(44773177-44773248)
chr4 (135-207)||(52312511-52312582)
[»] chr3 (29 HSPs)
chr3 (1-208)||(9512923-9513134)
chr3 (1-208)||(9520898-9521109)
chr3 (1-204)||(32307684-32307894)
chr3 (1-208)||(49667979-49668194)
chr3 (1-145)||(1644578-1644728)
chr3 (1-208)||(16103783-16104006)
chr3 (1-208)||(16097331-16097555)
chr3 (1-208)||(12174156-12174377)
chr3 (1-71)||(49389524-49389594)
chr3 (106-208)||(15470927-15471030)
chr3 (106-207)||(53301566-53301668)
chr3 (106-181)||(14234517-14234593)
chr3 (1-63)||(12934206-12934268)
chr3 (106-207)||(13210342-13210444)
chr3 (92-184)||(23274714-23274808)
chr3 (106-207)||(27165251-27165353)
chr3 (92-185)||(52523727-52523824)
chr3 (135-207)||(16454371-16454442)
chr3 (92-185)||(21618472-21618565)
chr3 (149-207)||(28194694-28194752)
chr3 (135-207)||(6469224-6469295)
chr3 (135-207)||(7781437-7781508)
chr3 (135-207)||(17463179-17463250)
chr3 (135-207)||(28848701-28848772)
chr3 (135-207)||(34159327-34159398)
chr3 (92-207)||(36166599-36166714)
chr3 (135-207)||(45606997-45607068)
chr3 (135-207)||(55476492-55476563)
chr3 (135-207)||(55500943-55501014)
[»] chr1 (22 HSPs)
chr1 (1-204)||(21754052-21754262)
chr1 (105-208)||(21161719-21161822)
chr1 (1-208)||(33681010-33681234)
chr1 (4-208)||(20248282-20248499)
chr1 (1-208)||(52927876-52928088)
chr1 (92-208)||(22921869-22921987)
chr1 (106-208)||(22237630-22237733)
chr1 (95-185)||(16758675-16758769)
chr1 (109-185)||(14295569-14295646)
chr1 (109-185)||(20918630-20918707)
chr1 (106-185)||(21896271-21896351)
chr1 (106-185)||(35261093-35261173)
chr1 (3-71)||(20918758-20918826)
chr1 (106-185)||(21861585-21861665)
chr1 (135-185)||(22123157-22123207)
chr1 (135-207)||(13988867-13988938)
chr1 (1-65)||(16368180-16368244)
chr1 (135-207)||(21923381-21923452)
chr1 (135-207)||(23593825-23593896)
chr1 (135-207)||(29298138-29298209)
chr1 (135-207)||(29776689-29776760)
chr1 (149-185)||(38801447-38801483)
[»] chr6 (32 HSPs)
chr6 (1-208)||(19652198-19652420)
chr6 (105-208)||(31155411-31155515)
chr6 (105-208)||(4185835-4185939)
chr6 (105-202)||(4186376-4186474)
chr6 (111-207)||(27333238-27333335)
chr6 (111-207)||(27393978-27394075)
chr6 (92-185)||(23019432-23019527)
chr6 (107-185)||(9098528-9098609)
chr6 (1-71)||(28496368-28496438)
chr6 (1-71)||(29808779-29808849)
chr6 (92-145)||(22080739-22080792)
chr6 (109-185)||(28496489-28496566)
chr6 (109-185)||(29808900-29808977)
chr6 (135-207)||(1541001-1541072)
chr6 (105-145)||(4668225-4668265)
chr6 (105-145)||(4675072-4675112)
chr6 (106-185)||(20109164-20109244)
chr6 (1-185)||(19668397-19668599)
chr6 (27-65)||(20109304-20109342)
chr6 (109-185)||(25644346-25644424)
chr6 (135-197)||(25688513-25688574)
chr6 (135-185)||(34963396-34963445)
chr6 (159-208)||(4738626-4738675)
chr6 (135-207)||(2291270-2291341)
chr6 (135-207)||(12742318-12742389)
chr6 (135-207)||(18334682-18334753)
chr6 (135-207)||(19005047-19005118)
chr6 (135-207)||(19859009-19859080)
chr6 (149-185)||(22831529-22831565)
chr6 (135-207)||(24422548-24422619)
chr6 (135-207)||(33861795-33861866)
chr6 (135-207)||(33864279-33864350)
[»] chr2 (21 HSPs)
chr2 (1-207)||(22134111-22134323)
chr2 (92-206)||(28405981-28406098)
chr2 (92-208)||(25175853-25175971)
chr2 (114-184)||(7679612-7679683)
chr2 (92-184)||(19671857-19671951)
chr2 (1-65)||(22459455-22459519)
chr2 (1-65)||(23791438-23791502)
chr2 (106-181)||(7748-7824)
chr2 (110-185)||(23071968-23072044)
chr2 (149-207)||(298874-298932)
chr2 (135-207)||(571398-571469)
chr2 (135-207)||(6725996-6726067)
chr2 (135-207)||(18808944-18809015)
chr2 (27-71)||(23071872-23071916)
chr2 (135-207)||(23130863-23130934)
chr2 (135-207)||(23133330-23133401)
chr2 (135-207)||(23135591-23135662)
chr2 (135-207)||(23709622-23709693)
chr2 (135-207)||(23712103-23712174)
chr2 (135-207)||(34402612-34402683)
chr2 (135-207)||(39682314-39682385)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-210)||(160685-160910)
[»] scaffold0150 (1 HSPs)
scaffold0150 (1-208)||(32101-32318)
[»] scaffold0028 (6 HSPs)
scaffold0028 (1-208)||(132661-132878)
scaffold0028 (107-185)||(62224-62303)
scaffold0028 (106-207)||(134212-134313)
scaffold0028 (106-207)||(136681-136782)
scaffold0028 (106-207)||(139150-139251)
scaffold0028 (106-207)||(144088-144189)
[»] chr8 (23 HSPs)
chr8 (1-208)||(26355594-26355816)
chr8 (92-207)||(38855251-38855368)
chr8 (106-207)||(6520372-6520474)
chr8 (92-208)||(21673707-21673825)
chr8 (92-208)||(23760844-23760962)
chr8 (1-65)||(20498726-20498790)
chr8 (109-185)||(5866292-5866369)
chr8 (109-207)||(21490999-21491098)
chr8 (109-207)||(17140920-17141019)
chr8 (92-185)||(21285623-21285718)
chr8 (106-185)||(20498588-20498668)
chr8 (109-207)||(21249388-21249488)
chr8 (109-207)||(21255226-21255326)
chr8 (1-71)||(17141070-17141140)
chr8 (1-66)||(21491154-21491219)
chr8 (135-207)||(1484403-1484474)
chr8 (135-207)||(5853382-5853453)
chr8 (135-207)||(15203321-15203392)
chr8 (149-185)||(16199703-16199739)
chr8 (135-207)||(19937096-19937167)
chr8 (135-207)||(20046285-20046356)
chr8 (135-207)||(20403228-20403299)
chr8 (135-207)||(22001754-22001825)
[»] scaffold0555 (1 HSPs)
scaffold0555 (1-208)||(10435-10659)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-208)||(129908-130132)
[»] chr5 (19 HSPs)
chr5 (1-208)||(21565545-21565769)
chr5 (3-207)||(19668902-19669122)
chr5 (1-208)||(22959429-22959650)
chr5 (110-207)||(21329516-21329614)
chr5 (106-207)||(21502171-21502273)
chr5 (110-207)||(19660854-19660952)
chr5 (92-185)||(26012035-26012130)
chr5 (111-185)||(36314603-36314678)
chr5 (135-207)||(42245455-42245526)
chr5 (1-71)||(19660732-19660802)
chr5 (135-207)||(264858-264929)
chr5 (135-207)||(10733030-10733101)
chr5 (135-207)||(11581289-11581360)
chr5 (149-185)||(20027000-20027036)
chr5 (135-207)||(20909013-20909084)
chr5 (135-207)||(20918038-20918109)
chr5 (135-207)||(29329935-29330006)
chr5 (135-207)||(39245137-39245208)
chr5 (135-207)||(39363385-39363456)
[»] scaffold0102 (1 HSPs)
scaffold0102 (92-208)||(19267-19385)
[»] chr7 (34 HSPs)
chr7 (92-208)||(18005649-18005767)
chr7 (106-208)||(811146-811249)
chr7 (106-208)||(44014181-44014284)
chr7 (92-207)||(67749-67866)
chr7 (106-208)||(16219732-16219835)
chr7 (106-207)||(47831811-47831913)
chr7 (109-207)||(34200790-34200889)
chr7 (113-207)||(28505320-28505415)
chr7 (109-185)||(16495428-16495505)
chr7 (92-185)||(16056354-16056448)
chr7 (1-65)||(15116643-15116707)
chr7 (92-185)||(2280119-2280214)
chr7 (109-207)||(11996045-11996144)
chr7 (109-184)||(12255809-12255887)
chr7 (92-184)||(10063818-10063912)
chr7 (87-207)||(18430713-18430834)
chr7 (1-71)||(28505195-28505265)
chr7 (135-207)||(456322-456393)
chr7 (135-207)||(11393377-11393448)
chr7 (135-207)||(11972497-11972568)
chr7 (27-71)||(11995950-11995994)
chr7 (135-207)||(14949212-14949283)
chr7 (1-65)||(15113106-15113170)
chr7 (135-207)||(15376803-15376874)
chr7 (135-207)||(16232521-16232592)
chr7 (135-207)||(16410060-16410131)
chr7 (135-207)||(18640273-18640344)
chr7 (135-207)||(20385213-20385284)
chr7 (135-207)||(21189685-21189756)
chr7 (135-207)||(24702239-24702310)
chr7 (135-207)||(24704689-24704760)
chr7 (135-207)||(32125492-32125563)
chr7 (135-207)||(41522918-41522989)
chr7 (135-207)||(41525380-41525451)
[»] scaffold1984 (1 HSPs)
scaffold1984 (5-208)||(132-352)
[»] scaffold0621 (3 HSPs)
scaffold0621 (92-207)||(6539-6656)
scaffold0621 (1-65)||(8632-8696)
scaffold0621 (106-185)||(8492-8572)
[»] scaffold0211 (2 HSPs)
scaffold0211 (1-88)||(28705-28792)
scaffold0211 (130-208)||(28808-28888)
[»] scaffold0023 (6 HSPs)
scaffold0023 (92-208)||(100377-100495)
scaffold0023 (92-208)||(40174-40292)
scaffold0023 (149-208)||(101502-101561)
scaffold0023 (149-207)||(119879-119937)
scaffold0023 (135-207)||(44455-44526)
scaffold0023 (135-207)||(94412-94483)
[»] scaffold1137 (1 HSPs)
scaffold1137 (27-88)||(2223-2284)
[»] scaffold0125 (1 HSPs)
scaffold0125 (1-208)||(45686-45910)
[»] scaffold0556 (1 HSPs)
scaffold0556 (1-185)||(6838-7036)
[»] scaffold0100 (1 HSPs)
scaffold0100 (105-208)||(23897-24001)
[»] scaffold0037 (1 HSPs)
scaffold0037 (106-208)||(22685-22788)
[»] scaffold0628 (1 HSPs)
scaffold0628 (92-208)||(2806-2924)
[»] scaffold0278 (1 HSPs)
scaffold0278 (92-200)||(5654-5764)
[»] scaffold0243 (1 HSPs)
scaffold0243 (106-207)||(6138-6240)
[»] scaffold0207 (1 HSPs)
scaffold0207 (92-208)||(2645-2763)
[»] scaffold0476 (1 HSPs)
scaffold0476 (106-207)||(12770-12872)
[»] scaffold0333 (2 HSPs)
scaffold0333 (106-207)||(6615-6717)
scaffold0333 (106-207)||(13995-14097)
[»] scaffold0034 (1 HSPs)
scaffold0034 (92-185)||(32562-32656)
[»] scaffold0020 (1 HSPs)
scaffold0020 (106-207)||(15792-15894)
[»] scaffold0008 (1 HSPs)
scaffold0008 (92-208)||(14697-14815)
[»] scaffold1765 (2 HSPs)
scaffold1765 (110-185)||(1108-1184)
scaffold1765 (4-71)||(1239-1306)
[»] scaffold0138 (1 HSPs)
scaffold0138 (106-208)||(12942-13045)
[»] scaffold0046 (2 HSPs)
scaffold0046 (109-207)||(11296-11395)
scaffold0046 (109-207)||(2001-2100)
[»] scaffold0074 (1 HSPs)
scaffold0074 (106-183)||(38717-38795)
[»] scaffold0078 (1 HSPs)
scaffold0078 (106-185)||(10553-10633)
[»] scaffold0530 (1 HSPs)
scaffold0530 (106-207)||(1049-1151)
[»] scaffold0184 (1 HSPs)
scaffold0184 (109-185)||(1087-1164)
[»] scaffold2014 (1 HSPs)
scaffold2014 (114-185)||(1058-1130)
[»] scaffold0507 (1 HSPs)
scaffold0507 (1-65)||(7952-8016)
[»] scaffold0261 (1 HSPs)
scaffold0261 (109-207)||(15665-15764)
[»] scaffold1257 (1 HSPs)
scaffold1257 (92-145)||(2218-2272)
[»] scaffold0357 (1 HSPs)
scaffold0357 (94-185)||(13154-13247)
[»] scaffold0012 (1 HSPs)
scaffold0012 (92-145)||(225474-225527)
[»] scaffold0475 (1 HSPs)
scaffold0475 (105-145)||(9145-9185)
[»] scaffold0413 (2 HSPs)
scaffold0413 (106-185)||(12594-12674)
scaffold0413 (1-65)||(12731-12795)
[»] scaffold0075 (2 HSPs)
scaffold0075 (1-65)||(53442-53506)
scaffold0075 (106-181)||(53564-53640)
[»] scaffold0461 (1 HSPs)
scaffold0461 (92-184)||(11491-11585)
[»] scaffold0124 (1 HSPs)
scaffold0124 (92-184)||(38256-38350)
[»] scaffold0540 (1 HSPs)
scaffold0540 (92-207)||(3151-3267)
[»] scaffold0444 (1 HSPs)
scaffold0444 (135-207)||(13393-13464)
[»] scaffold0420 (1 HSPs)
scaffold0420 (149-185)||(6343-6379)
[»] scaffold0254 (1 HSPs)
scaffold0254 (135-207)||(20748-20819)
[»] scaffold0175 (1 HSPs)
scaffold0175 (27-71)||(34277-34321)
[»] scaffold0161 (1 HSPs)
scaffold0161 (27-71)||(2365-2409)
[»] scaffold0145 (1 HSPs)
scaffold0145 (135-207)||(9750-9821)
[»] scaffold0134 (1 HSPs)
scaffold0134 (135-207)||(37822-37893)
[»] scaffold0106 (1 HSPs)
scaffold0106 (149-185)||(1315-1351)
[»] scaffold0032 (1 HSPs)
scaffold0032 (149-185)||(51608-51644)
[»] scaffold0022 (1 HSPs)
scaffold0022 (92-207)||(116431-116546)
[»] scaffold0021 (1 HSPs)
scaffold0021 (149-185)||(174792-174828)
[»] scaffold0003 (1 HSPs)
scaffold0003 (135-207)||(158540-158611)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 12774224 - 12774010
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggatt------ataaatga 94  Q
    |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||| |||    
T  12774224 ttgtttatcttgctgttgttgttccagtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggattatgttgataattga 12774125  T
Q  95 gatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggt 193  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | ||    
T  12774124 gatgttgttgattgtattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagt 12774025  T
Q  194 tgatgatgatgatgt 208  Q
    |||||||||||||||    
T  12774024 tgatgatgatgatgt 12774010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8846599 - 8846529
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||    
T  8846599 ttgtttatcttgtagttgttgttccagtaagactgatgcatatgaattgatgttgtttataatgttatata 8846529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 39706303 - 39706405
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| ||||||||||||||||  | ||||| |||||||| |||||||||| ||||||||||| || | |||||| | ||||    
T  39706303 ttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatg 39706402  T
Q  205 atg 207  Q
    |||    
T  39706403 atg 39706405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 8846460 - 8846359
Alignment:
Q  108 gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgat 206  Q
    ||||||||||||||||| ||| ||||||||||||||||  | |||||||||||||| |||||||||| || || ||||| || | |||||||||||||||    
T  8846460 gcattcgatattgttatctcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgaataagtcggtctaagttgatgatgatgat 8846361  T
Q  207 gt 208  Q
    ||    
T  8846360 gt 8846359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43198446 - 43198510
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    |||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||||    
T  43198446 ttgtttatcttgttgttgatgttccagtaagactaatgcatatgaattgatgttgtttataatgt 43198510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 52243194 - 52243291
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacga--tgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||| | || |||| ||||||||||||||| ||  ||||||||||||||  | |||||||||||||| |||||||||| |||||||||||    
T  52243194 tgagatgttgttgaatttcatttgatattgttatatcatgaactgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcg 52243291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 15551918 - 15551821
Alignment:
Q  111 ttcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    ||||||||| |||||||| ||||  ||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |||| ||| |||||||    
T  15551918 ttcgatattattatatcatgatggattgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgttgaagatgatg 15551821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 13866 - 13946
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||| ||||||||||||||| | || |||||||||||  | ||||||||||||||  ||||||||| |||||||||||    
T  13866 ttgcatttgatattgttatatcatgttgttttgcatactgcctatgttgctgtttgtttattaactaagctgcatgagtcg 13946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 12288222 - 12288305
Alignment:
Q  105 attgcattcgatattgttatatcacga--tgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||| ||||||||||||||| ||  || |||||||||||  | |||||||||||||| |||||||||| |||||||||||    
T  12288222 attgcatttgatattgttatatcatgaactggtttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcg 12288305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13744 - 13808
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    |||||||||||  ||||| |||| | ||||||||||||  ||||| |||||||||||||||||||    
T  13744 ttgtttatctttatgttgatgttccagtaagactgatgtttatgatttgatgttgtttataatgt 13808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 16596751 - 16596683
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttg 176  Q
    ||||||||||| |||||||| |||| ||||||||||   | |||||||||||||| |||||||||||||    
T  16596751 cattcgatattattatatcatgatggtttgcatactacctatgttgctgtttgttatttaactaagttg 16596683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 43198568 - 43198650
Alignment:
Q  106 ttgcattcgatattgttatatcacga--tgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||| ||||| ||||||||| ||  || |||||||| ||| | |||||||||||||| |||||||||| |||||||||||    
T  43198568 ttgcatttgatatggttatatcatgaattgttttgcatattgtctatgttgctgtttgttatttaactaagctgcatgagtcg 43198650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 44615390 - 44615289
Alignment:
Q  106 ttgcattcgatattgttatatcacgatg-atttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||| |||||| |||| ||| | || ||||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | ||||    
T  44615390 ttgcatttgatattattatgtcatgctgtatttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatg 44615292  T
Q  205 atg 207  Q
    |||    
T  44615291 atg 44615289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 14053366 - 14053399
Alignment:
Q  155 tgtttgttgtttaactaagttgcatgagtcgatc 188  Q
    |||||||| |||||||||||||||||||||||||    
T  14053366 tgtttgttatttaactaagttgcatgagtcgatc 14053399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 12397 - 12468
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  12397 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 12468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 1837599 - 1837670
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  1837599 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 1837670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 6190524 - 6190488
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||| |||||||||||| |||||||||||    
T  6190524 tgttgctgtttgatgtttaactaagctgcatgagtcg 6190488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 15118442 - 15118513
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  15118442 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 15118513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 17046549 - 17046513
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||||| |||||||||| |||||||||||    
T  17046549 tgttgctgtttgttatttaactaagctgcatgagtcg 17046513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 44773177 - 44773248
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  44773177 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 44773248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 52312582 - 52312511
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  52312582 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 52312511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 9513134 - 9512923
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggattat------aaatga 94  Q
    ||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      ||||||    
T  9513134 ttgtttaccttgttgttattgttccagtaagactgatgcatatgaattgatgttgtttataatgttttatatacattaaatggattatgttgataaatga 9513035  T
Q  95 gatgttgtttattgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggt 193  Q
    |||||||   |||||||||||||||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||| || | |     
T  9513034 gatgttg---attgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttgtttaactaagctgcatgagtcggtctaaga 9512938  T
Q  194 tgatgatgatgatgt 208  Q
    |||||||||||||||    
T  9512937 tgatgatgatgatgt 9512923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 9521109 - 9520898
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggattat------aaatga 94  Q
    ||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||      ||||||    
T  9521109 ttgtttaccttgttgttattgttccagtaagactgatgcatatgaattgatgttgtttataatgtgttatatacattaaatggattatgttgataaatga 9521010  T
Q  95 gatgttgtttattgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggt 193  Q
    |||||||   |||||||||||||||||||||||| ||||||||||||||||  | ||||||||||||||||||||||||| ||||||||||| || | |     
T  9521009 gatgttg---attgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttgtttaactaagctgcatgagtcggtctaaga 9520913  T
Q  194 tgatgatgatgatgt 208  Q
    |||||||||||||||    
T  9520912 tgatgatgatgatgt 9520898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 32307894 - 32307684
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggattat------aaatga 94  Q
    |||||||||||| |||  |||||   ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||      || |||    
T  32307894 ttgtttatcttgctgtcattgttctagtaagactgatgcttatgaattaatgttgtttataatgttgtatatacattaaatggattatgttgataattga 32307795  T
Q  95 gatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggt 193  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | ||    
T  32307794 gatgttgttgattgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagt 32307695  T
Q  194 tgatgatgatg 204  Q
    |||||||||||    
T  32307694 tgatgatgatg 32307684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 49667979 - 49668194
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggattat------aaatga 94  Q
    |||||||||||| |||  ||||| | ||||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||||||||      ||||||    
T  49667979 ttgtttatcttgctgtcattgttccagtaagactgatgcatatgagttgatgttgtatataatgctgtatatactttaaatggattatgttgataaatga 49668078  T
Q  95 gatgtt-gtttattgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccagg 192  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |    
T  49668079 gatgtttgttgattgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaag 49668178  T
Q  193 ttgatgatgatgatgt 208  Q
     |||||||||||||||    
T  49668179 atgatgatgatgatgt 49668194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 1644578 - 1644728
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggatt------ataaatga 94  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||| |||    
T  1644578 ttgtttatcttgttgttattgttccagtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggattatgttgataattga 1644677  T
Q  95 gatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg 145  Q
    ||| ||||| |||| ||||||||||||||||| | ||||||||||||||||    
T  1644678 gatattgttgattgtattcgatattgttatataatgatgatttgcatactg 1644728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 16104006 - 16103783
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtata--------tacattaaatggattat---- 88  Q
    |||||||||||| |||||||||| | |||||||| || |||||||||||||||||||||||||||| ||||        ||||||||||| |||||        
T  16104006 ttgtttatcttgctgttgttgttccagtaagactaatccatatgaattgatgttgtttataatgttatataattttatatacattaaatgaattatgttt 16103907  T
Q  89 ---aaatgagatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtc 184  Q
       |  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||  | |||||||||| |||||||||||||| ||||||||||    
T  16103906 gatatttgagatgttgttgattgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgttcgttgtttaactaagctgcatgagtc 16103807  T
Q  185 gatccaggttgatgatgatgatgt 208  Q
    | || | |||||||||||||||||    
T  16103806 ggtctaagttgatgatgatgatgt 16103783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 16097555 - 16097331
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatg--------ttgtatatacattaaatggatt------ 86  Q
    |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||        |||||||||||||| ||| |||          
T  16097555 ttgtttatcttgctgttgttgttccagtaagactgatgcatatgaattgatgttgtttataatgttatataattgtatatacattacatgaattatgttt 16097456  T
Q  87 -ataaatgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagt 183  Q
     |||  |||||||||| | | ||||||||||||||||||||| | ||||||||||||| ||  | ||||| |||||||| |||||||||| |||||||||    
T  16097455 gatatttgagatgttgatgacttgcattcgatattgttatatgatgatgatttgcatattgcctatgttgttgtttgttatttaactaagctgcatgagt 16097356  T
Q  184 cgatccaggttgatgatgatgatgt 208  Q
    || || | |||||||||||||||||    
T  16097355 cggtctaagttgatgatgatgatgt 16097331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 12174156 - 12174377
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt--------gtatatacattaaatggattataaat 92  Q
    ||||||| |||| |||||||||| | |||||||||||||||||||||  |||||||||||||||||        |||||||||||| |||  ||||   |    
T  12174156 ttgtttagcttgctgttgttgttccagtaagactgatgcatatgaatcaatgttgtttataatgttatataattgtatatacattacatgacttatgttt 12174255  T
Q  93 gagat----gttgtt-tattgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcga 186  Q
    || ||    |||||| | ||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| |||||||||||     
T  12174256 gatatttgagttgttgttttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcgg 12174355  T
Q  187 tccaggttgatgatgatgatgt 208  Q
    || | |||||||||||||||||    
T  12174356 tctaagttgatgatgatgatgt 12174377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 49389524 - 49389594
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||    
T  49389524 ttgtttatcttgttgttgttgttccagtaagactgatgcatatgaattgatgttgtttataatgttatata 49389594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 15471030 - 15470927
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| ||||||||||||||||  | ||||||||| |||| |||||||||| ||||||||||| || | ||||| |||||||    
T  15471030 ttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtctgttatttaactaagctgcatgagtcggtctaagttgaagatgatg 15470931  T
Q  205 atgt 208  Q
    ||||    
T  15470930 atgt 15470927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 53301566 - 53301668
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||| ||||||||||||||| | || |||||||||||| | |||||||||||||| ||||||||||||| |||||||| || | |||||| | ||||    
T  53301566 ttgcatttgatattgttatatcatgttgttttgcatactgtctatgttgctgtttgttatttaactaagttgtatgagtcggtctaagttgattaagatg 53301665  T
Q  205 atg 207  Q
    |||    
T  53301666 atg 53301668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 14234593 - 14234517
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatga 181  Q
    ||||||||||||||||||||||| ||||||||||||||||  | |||||||| ||||| |||||||||| |||||||    
T  14234593 ttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgcttgttatttaactaagctgcatga 14234517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12934206 - 12934268
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataat 63  Q
    |||||||||||| |||  ||||| | |||||||||||||||||||||||||||||||||||||    
T  12934206 ttgtttatcttgctgtcattgttccagtaagactgatgcatatgaattgatgttgtttataat 12934268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 13210342 - 13210444
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    |||||||||||||| |||||||| |||| |||||||||||  | ||||||| |||||| |||||||||| ||||||||||| || | |||| ||| ||||    
T  13210342 ttgcattcgatattattatatcatgatggtttgcatactgcctatgttgctatttgttatttaactaagctgcatgagtcggtctaagttgttgaagatg 13210441  T
Q  205 atg 207  Q
    |||    
T  13210442 atg 13210444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 23274808 - 23274714
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtc 184  Q
    |||||||||||||| |||| ||||||||| |||||||| |||| |||||||||||  | |||||||| |||||  ||||||||||||||||||||    
T  23274808 tgagatgttgtttacttgcgttcgatattattatatcatgatgttttgcatactgcctatgttgctgattgttaattaactaagttgcatgagtc 23274714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 27165353 - 27165251
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||| ||||||| ||||||| | || |||||||||||| | | |||||||||||| |||||||||| ||||||||||| || | |||||| | ||||    
T  27165353 ttgcatttgatattggtatatcatgttgttttgcatactgtctatattgctgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatg 27165254  T
Q  205 atg 207  Q
    |||    
T  27165253 atg 27165251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 52523727 - 52523824
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacga--tgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||| ||| ||||||||||||||||||||| ||  || |||||||||||  | ||||| |||||||| |||||||||| |||||||||||    
T  52523727 tgagatgttgttgatttgcattcgatattgttatatcatgaactgttttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcg 52523824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 16454371 - 16454442
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||||||||||||||| || | |||||| | |||||||    
T  16454371 tttgtatactgttgtgttgctgtt-gttatttaactaagttgcatgagtcggtctaagttgattaagatgatg 16454442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 21618565 - 21618472
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||| | ||||||| |||||| |||| ||| | || |||| |||||||| ||| |||||| ||| |||||||||| |||||||||||    
T  21618565 tgagatgttgttgacttgcatttgatattattatgtcatgctgttttgtatactgttgtgtcgctgtt-gttatttaactaagctgcatgagtcg 21618472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 28194752 - 28194694
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||||||||||||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  28194752 tgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 28194694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 6469224 - 6469295
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  6469224 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 6469295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 7781437 - 7781508
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  7781437 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 7781508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 17463250 - 17463179
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  17463250 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 17463179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 28848701 - 28848772
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  28848701 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 28848772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 34159398 - 34159327
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  34159398 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 34159327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 36166714 - 36166599
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatcca 190  Q
    |||||||||||| | ||||||| |||||| |||| ||| | || |||| |||||| | ||| |||||| ||| |||||||||| ||||||||||| || |    
T  36166714 tgagatgttgttgacttgcatttgatattattatgtcatgctgttttgtatactgctgtgtcgctgtt-gttatttaactaagctgcatgagtcggtcta 36166616  T
Q  191 ggttgatgatgatgatg 207  Q
     |||||| | |||||||    
T  36166615 agttgattaagatgatg 36166599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 45606997 - 45607068
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  45606997 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 45607068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 55476563 - 55476492
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  55476563 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 55476492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 55501014 - 55500943
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  55501014 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 55500943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 8e-57; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 21754262 - 21754052
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggatt------ataaatga 94  Q
    |||||||||||| |||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||| |||    
T  21754262 ttgtttatcttgctgtcattgttccagtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggattatgttgataattga 21754163  T
Q  95 gatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggt 193  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||||||||  | ||||| |||||||| |||||||||| ||||||||||| || | ||    
T  21754162 gatgttgttgattgcatttgatattgttatatcatgatgatttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcggtctaagt 21754063  T
Q  194 tgatgatgatg 204  Q
    |||||||||||    
T  21754062 tgatgatgatg 21754052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 21161822 - 21161719
Alignment:
Q  105 attgcattcgatattgttatatcacgatgatttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21161822 attgcattcgatattgttatatcacgatgatttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaagttgatgatgatg 21161723  T
Q  205 atgt 208  Q
    ||||    
T  21161722 atgt 21161719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 33681234 - 33681010
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt--------gtatatacattaaatggattat---- 88  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||        |||||||||||| ||| |||||        
T  33681234 ttgtttatcttgttgttgttgttctagtaagactgatgcatatgaattgatgttgtttataatgttatataattgtatatacattacatgaattatgttt 33681135  T
Q  89 ---aaatgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagt 183  Q
       |  ||||||||||   | ||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| ||||||||||||||||||||    
T  33681134 gatatttgagatgttgacgacttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagttgcatgagt 33681035  T
Q  184 cgatccaggttgatgatgatgatgt 208  Q
    || || | ||||| |||||||||||    
T  33681034 cggtctaagttgaagatgatgatgt 33681010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 20248499 - 20248282
Alignment:
Q  4 tttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatg--------ttgtatatacattaaatggattataaatgag 95  Q
    ||||||||| |||||||||  | |||||||||||||||||||||  |||||||||||||||        |||||||||||||| |||  ||||   |||     
T  20248499 tttatcttgatgttgttgtc-cagtaagactgatgcatatgaatccatgttgtttataatgatatataattgtatatacattacatgacttatgtttgat 20248401  T
Q  96 at----gttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    ||    |||||| ||| ||||||||||||||||||||| ||||||||||||||||  | ||||| |||||||| |||||||||||||||||||||| ||     
T  20248400 atttaagttgttgatttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgttgtttgttttttaactaagttgcatgagtcggtct 20248301  T
Q  190 aggttgatgatgatgatgt 208  Q
    | |||||||||||||||||    
T  20248300 aagttgatgatgatgatgt 20248282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 52927876 - 52928088
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt--------gtatatacattaaatggattataaat 92  Q
    |||||||||||| | |||||||| | ||||||||||||||||||||||||||||||||||||||||        |||||||||||| ||| |||||   |    
T  52927876 ttgtttatcttgctattgttgttccagtaagactgatgcatatgaattgatgttgtttataatgttatataattgtatatacattacatgaattatgttt 52927975  T
Q  93 gagatgttgtttattgcattcgatattgttatatcacgatgatttgcatactgt-tttgttgctgtttgttgtttaactaagttgcatgagtcgatccag 191  Q
    || ||    || |    ||||||||||||||||||| ||||||||||||||||| | ||||| |||||||| |||||||||| ||||||||||| || |     
T  52927976 gatat----ttgagatgattcgatattgttatatcatgatgatttgcatactgtctatgttgttgtttgttatttaactaagctgcatgagtcggtctaa 52928071  T
Q  192 gttgatgatgatgatgt 208  Q
    ||||| |||| ||||||    
T  52928072 gttgaagatggtgatgt 52928088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 22921869 - 22921987
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||  | ||||| |||||||| |||||||||| ||||||||||| ||     
T  22921869 tgagatgttgttgatttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcggtct 22921968  T
Q  190 aggttgatgatgatgatgt 208  Q
    | | |||||||||||||||    
T  22921969 aagatgatgatgatgatgt 22921987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 22237733 - 22237630
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| ||||||||||||| ||  | ||| |||||||||| |||||||||| | ||||||||| || | ||||| |||||||    
T  22237733 ttgcattcgatattgttatatcatgatgatttgcataatgcctatgtcgctgtttgttatttaactaagcttcatgagtcggtctaagttgaagatgatg 22237634  T
Q  205 atgt 208  Q
    ||||    
T  22237633 atgt 22237630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 16758769 - 16758675
Alignment:
Q  95 gatgttgtt-tattgcattcgatattgttatatcacga--tgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||| ||||| ||| ||||||||||||||| ||  || |||||||||||  | |||||||||||||| ||||||||||||||||||||||    
T  16758769 gatgttgttgtattgtatttgatattgttatatcatgaactggtttgcatactgcctatgttgctgtttgttatttaactaagttgcatgagtcg 16758675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 14295569 - 14295646
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||| |||||||| |||| ||||||||||   | |||||||||||||| |||||||||| |||||||||||    
T  14295569 cattcgatattattatatcatgatggtttgcatactacctatgttgctgtttgttatttaactaagctgcatgagtcg 14295646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 20918707 - 20918630
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||| |||||||| |||| |||||||||||  | |||||| ||||||| |||||||||| |||||||||||    
T  20918707 cattcgatattattatatcatgatggtttgcatactgcctatgttgcagtttgttatttaactaagctgcatgagtcg 20918630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 21896271 - 21896351
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||| ||||||||||||||| | || |||| ||||||  | ||||||||||||||  |||||||||||||||||||||    
T  21896271 ttgcatttgatattgttatatcatgctgttttgtatactgcctatgttgctgtttgtttattaactaagttgcatgagtcg 21896351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 35261093 - 35261173
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||| ||||||||||||||| | || |||||||||||  | ||||||||||||||  ||||||||| |||||||||||    
T  35261093 ttgcatttgatattgttatatcatgctgttttgcatactgcctatgttgctgtttgtttattaactaagctgcatgagtcg 35261173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 20918826 - 20918758
Alignment:
Q  3 gtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||| |||||||||  |||| | |||||||| |||| ||||||||||||||| |||||||||| ||||    
T  20918826 gtttaccttgttgttaatgttccagtaagactcatgcttatgaattgatgttgcttataatgttatata 20918758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 185
Target Start/End: Original strand, 21861585 - 21861665
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||| ||||||||||||||| | || |||||||||||  | ||||||||||||||  ||| ||||| |||||||||||    
T  21861585 ttgcatttgatattgttatatcatgctgttttgcatactgcctatgttgctgtttgtttattagctaagctgcatgagtcg 21861665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 22123157 - 22123207
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||| |||||||| |||||||||||| | |||||||||| |||||||||||    
T  22123157 tttgtatactgttgtgttgctgtttgctatttaactaagctgcatgagtcg 22123207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 13988938 - 13988867
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  13988938 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 13988867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16368180 - 16368244
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    |||||||||||  |||||||||||| ||||| ||||   |||||| ||||||||||| |||||||    
T  16368180 ttgtttatcttactgttgttgtttcagtaagcctgaattatatgatttgatgttgttaataatgt 16368244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 21923381 - 21923452
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  21923381 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 21923452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 23593825 - 23593896
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  23593825 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 23593896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 29298209 - 29298138
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  29298209 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 29298138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 29776760 - 29776689
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  29776760 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 29776689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 38801447 - 38801483
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||||| |||||||||| |||||||||||    
T  38801447 tgttgctgtttgttatttaactaagctgcatgagtcg 38801483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 19652420 - 19652198
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt--------gtatatacattaaatggattataaa- 91  Q
    |||||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||||        
T  19652420 ttgtttatcttgctgttattgttccagtaagactgatgcatatgaattgatgttgtttataatgttatataattgtatatactttaaatggattatgttg 19652321  T
Q  92 -----tgagatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
         |||||||||||| |||||||||||||||||||||||| ||||||||||||||||  | ||||| ||||||||||||||||||| |||||||||||    
T  19652320 atgtttgagatgttgttgattgcattcgatattgttatatcatgatgatttgcatactgcctatgttgttgtttgttgtttaactaagctgcatgagtcg 19652221  T
Q  186 atccaggttgatgatgatgatgt 208  Q
     || | |||||||||||||||||    
T  19652220 gtctaagttgatgatgatgatgt 19652198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 31155411 - 31155515
Alignment:
Q  105 attgcattcgatattgttatatcacgatgatttgcatactgttttgttgctg-tttgttgtttaactaagttgcatgagtcgatccaggttgatgatgat 203  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  31155411 attgcattcgatattgttatatcacgatgacttgcatactgtttagttgctgttttgttatttaactaagttgcatgagtcaatccaagttgatgatgat 31155510  T
Q  204 gatgt 208  Q
    |||||    
T  31155511 gatgt 31155515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 4185835 - 4185939
Alignment:
Q  105 attgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgat 203  Q
    |||||||||||||||||||||||| ||||| ||||||||||  | ||||||||| ||||||||||||| | ||||||||||| |||| |||||||||||     
T  4185835 attgcattcgatattgttatatcatgatgagttgcatactgcctatgttgctgtctgttgtttaactatgctgcatgagtcggtccaagttgatgatgac 4185934  T
Q  204 gatgt 208  Q
    |||||    
T  4185935 gatgt 4185939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 4186474 - 4186376
Alignment:
Q  105 attgcattcgatattgttatatcacgatgatttgcatactgt-tttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatga 202  Q
    |||||||||||||||||||||||| ||||| ||||||||||| | ||||||||  ||||||||||||| | ||||||||||| |||| |||||||||||    
T  4186474 attgcattcgatattgttatatcatgatgagttgcatactgtctatgttgctgcctgttgtttaactatgctgcatgagtcggtccaagttgatgatga 4186376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 27333238 - 27333335
Alignment:
Q  111 ttcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  27333238 ttcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 27333335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 27393978 - 27394075
Alignment:
Q  111 ttcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  27393978 ttcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 27394075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 23019527 - 23019432
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||| | ||||||| ||||||||||||||| | || ||||||||||| || ||||||||||||||  ||||||||| ||||| |||||    
T  23019527 tgagatgttgttgacttgcatttgatattgttatatcatgttgttttgcatactgcttatgttgctgtttgtttattaactaagctgcataagtcg 23019432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 9098528 - 9098609
Alignment:
Q  107 tgcattcgatattgttatatcacga--tgatttgcatactgt-tttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||| ||||||||||||||| ||  || |||||||||||  |||||||||||||||| |||||||||| |||||||||||    
T  9098528 tgcatttgatattgttatatcatgaattgttttgcatactgcctttgttgctgtttgttatttaactaagctgcatgagtcg 9098609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 28496368 - 28496438
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||| |||| ||||  |||| | |||||||||||||||||||||| |||||| |||||||||| ||||    
T  28496368 ttgtttaccttgctgttaatgttccagtaagactgatgcatatgaattaatgttgcttataatgttatata 28496438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29808779 - 29808849
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||| |||| ||||  |||| | |||||||||||||||||||||| |||||| |||||||||| ||||    
T  29808779 ttgtttaccttgctgttaatgttccagtaagactgatgcatatgaattaatgttgcttataatgttatata 29808849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 22080739 - 22080792
Alignment:
Q  92 tgagatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg 145  Q
    ||||||||||||   |||||||||||||||||||||| |||| |||||||||||    
T  22080739 tgagatgttgttctgtgcattcgatattgttatatcatgatgttttgcatactg 22080792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 28496489 - 28496566
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||| |||||||| |||| |||||||||||  | |||||||  ||||| |||||||||| |||||||||||    
T  28496489 cattcgatattattatatcatgatggtttgcatactgcctatgttgctaattgttatttaactaagctgcatgagtcg 28496566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 29808900 - 29808977
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||| |||||||| |||| |||||||||||  | |||||||  ||||| |||||||||| |||||||||||    
T  29808900 cattcgatattattatatcatgatggtttgcatactgcctatgttgctaattgttatttaactaagctgcatgagtcg 29808977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 1541001 - 1541072
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| |||||||||||||| | |||||| | |||||||    
T  1541001 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcgatctaagttgattaagatgatg 1541072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 4668225 - 4668265
Alignment:
Q  105 attgcattcgatattgttatatcacgatgatttgcatactg 145  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  4668225 attgcattcgatattgttatatcatgatgagttgcatactg 4668265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 4675072 - 4675112
Alignment:
Q  105 attgcattcgatattgttatatcacgatgatttgcatactg 145  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  4675072 attgcattcgatattgttatatcatgatgagttgcatactg 4675112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 20109244 - 20109164
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||| ||||||||||||| | | || |||||||||||  | ||||||||||||||  ||||||||| |||||||||||    
T  20109244 ttgcatttgatattgttatattatgttgttttgcatactgcctatgttgctgtttgtttattaactaagctgcatgagtcg 20109164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 19668599 - 19668397
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataat--------gttgtatatacattaaatggattataaat 92  Q
    |||||||||||| |||||||||||| ||||| |||||| ||||||  |  ||||||| |||||        ||||||||||||||| ||| ||||   ||    
T  19668599 ttgtttatcttgctgttgttgtttcagtaagtctgatgtatatgatgtagtgttgttgataatgttatatagttgtatatacattacatgaattacgtat 19668500  T
Q  93 ga------gatgttgttta-ttgcattcgatattgttatatcacga--tgatttgcatactgt-tttgttgctgtttgttgtttaactaagttgcatgag 182  Q
    ||      ||||||||| | ||||||| ||||||||||||||| ||  || |||||||||| | | ||||||||||||||  ||||||||| ||||||||    
T  19668499 gatgttgtgatgttgttgatttgcatttgatattgttatatcatgaactgttttgcatactatctatgttgctgtttgttaattaactaagctgcatgag 19668400  T
Q  183 tcg 185  Q
    |||    
T  19668399 tcg 19668397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 20109342 - 20109304
Alignment:
Q  27 gtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  20109342 gtaagactgatgtatatcaattgatgttgtttataatgt 20109304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 25644424 - 25644346
Alignment:
Q  109 cattcgatattgttatatcacgatgattt-gcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||| ||||||||||||||||| || ||| ||||||||  | ||||||||| |||| |||||||||| |||||||||||    
T  25644424 catttgatattgttatatcacgctgtttttgcatactgcctatgttgctgtctgttatttaactaagctgcatgagtcg 25644346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 25688574 - 25688513
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgat 197  Q
    |||| |||||||| |||||||||| ||| |||||||||| |||||||||||||| | ||||||    
T  25688574 tttgtatactgttatgttgctgtt-gttatttaactaagctgcatgagtcgatctaagttgat 25688513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 34963445 - 34963396
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||| |||||||| |||||||||| ||| ||||||||||||||||||||||    
T  34963445 tttgtatactgttgtgttgctgtt-gttatttaactaagttgcatgagtcg 34963396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 4738626 - 4738675
Alignment:
Q  159 tgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatgt 208  Q
    ||||||||||||| | ||||||||||| |||| ||||||||||| |||||    
T  4738626 tgttgtttaactatgctgcatgagtcggtccaagttgatgatgacgatgt 4738675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 2291270 - 2291341
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  2291270 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 2291341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 12742389 - 12742318
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  12742389 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 12742318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 18334682 - 18334753
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  18334682 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 18334753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 19005118 - 19005047
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  19005118 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 19005047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 19859009 - 19859080
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  19859009 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 19859080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 22831565 - 22831529
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||||| |||||||||| |||||||||||    
T  22831565 tgttgctgtttgttatttaactaagctgcatgagtcg 22831529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 24422619 - 24422548
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  24422619 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 24422548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 33861866 - 33861795
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  33861866 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 33861795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 33864350 - 33864279
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  33864350 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 33864279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 22134111 - 22134323
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggatt------ataaatga 94  Q
    |||||||||||| |||  || || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||      ||||||||    
T  22134111 ttgtttatcttgctgtcatttttccagtaagactgatgcatatgaattggtgttgtttataatgttgtatatacattaaatggattatgttgataaatga 22134210  T
Q  95 gatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggt 193  Q
    |||||| || |||||||||||||||||||||| | ||||||||||||||||  | |||||||| ||| | |||||||||| ||||||||||| || | |     
T  22134211 gatgttattgattgcattcgatattgttatattatgatgatttgcatactgcctatgttgctg-ttgatatttaactaagctgcatgagtcggtctatga 22134309  T
Q  194 tgatgatgatgatg 207  Q
    ||||||||||||||    
T  22134310 tgatgatgatgatg 22134323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 28406098 - 28405981
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgattt-gcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatc 188  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||  | |||||||||||||| |||||||||||||||||||||| ||    
T  28406098 tgagatgttgttgatttgcattcgatattgttatatcatgatgattttgcatactgcctatgttgctgtttgttatttaactaagttgcatgagtcggtc 28405999  T
Q  189 caggttgatgatgatgat 206  Q
     | |||||||||||||||    
T  28405998 taagttgatgatgatgat 28405981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 25175971 - 25175853
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||| ||  ||     
T  25175971 tgagatgttgttgatttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgaatctgtct 25175872  T
Q  190 aggttgatgatgatgatgt 208  Q
    | |||||||||||||||||    
T  25175871 aagttgatgatgatgatgt 25175853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 7679683 - 7679612
Alignment:
Q  114 gatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtc 184  Q
    ||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||    
T  7679683 gatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtc 7679612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 19671951 - 19671857
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtc 184  Q
    |||||||||||||| |||| ||||||||| |||||||| |||| |||||||||||  | |||||||| |||||  ||||||||| ||||||||||    
T  19671951 tgagatgttgtttacttgcgttcgatattattatatcatgatgttttgcatactgcctatgttgctgattgttaattaactaagctgcatgagtc 19671857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 22459455 - 22459519
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    |||||||||||| |||| ||||||| |||||||||||| ||| || |||||||| ||||||||||    
T  22459455 ttgtttatcttgctgttattgtttcagtaagactgatgtatacgagttgatgttatttataatgt 22459519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23791502 - 23791438
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    ||||||||||||||||||||||||| ||||| ||||   |||||| ||||||||||| |||||||    
T  23791502 ttgtttatcttgttgttgttgtttcagtaagcctgaattatatgatttgatgttgttaataatgt 23791438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 7748 - 7824
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatga 181  Q
    ||||||| ||||||||||||||| | || |||||||||||  | ||||||||||||||  ||||||||| |||||||    
T  7748 ttgcatttgatattgttatatcatgttgttttgcatactgcctatgttgctgtttgtttattaactaagctgcatga 7824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 23071968 - 23072044
Alignment:
Q  110 attcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||| |||||||| |||| |||||||||||  | ||||| |||| ||| |||||||||| |||||||||||    
T  23071968 attcgatattattatatcatgatggtttgcatactgcctatgttgttgttcgttatttaactaagctgcatgagtcg 23072044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 298874 - 298932
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||||||||||||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  298874 tgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 298932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 571469 - 571398
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  571469 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 571398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 6726067 - 6725996
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  6726067 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 6725996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 18809015 - 18808944
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  18809015 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 18808944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 23071872 - 23071916
Alignment:
Q  27 gtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||||||||| |||||||| |||||| |||||||||| ||||    
T  23071872 gtaagactgatgcttatgaattaatgttgcttataatgttatata 23071916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 23130934 - 23130863
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  23130934 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 23130863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 23133401 - 23133330
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  23133401 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 23133330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 23135662 - 23135591
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  23135662 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 23135591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 23709622 - 23709693
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  23709622 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 23709693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 23712103 - 23712174
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  23712103 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 23712174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 34402612 - 34402683
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  34402612 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 34402683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 39682385 - 39682314
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  39682385 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 39682314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 160910 - 160685
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatg--------ttgtatatacattaaatggatt------ 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||| |||  ||          
T  160910 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttatataattgtatatatattacatgacttatgttt 160811  T
Q  87 -ataaatgagatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtc 184  Q
     |||  ||| |||||||| |||||||| ||||||||||||||| ||||||||||||||||  | |||||||| ||||| |||||||||| ||||||||||    
T  160810 gatatttgacatgttgttgattgcatttgatattgttatatcatgatgatttgcatactgcctatgttgctgattgttatttaactaagctgcatgagtc 160711  T
Q  185 gatccaggttgatgatgatgatgtcc 210  Q
    | || | |||||||||||||||||||    
T  160710 ggtctaagttgatgatgatgatgtcc 160685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 32318 - 32101
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgta--tatacattaaatggatt------ataaat 92  Q
    |||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||      |||| |    
T  32318 ttgtttatcttactgttgttgttccagtaagactgatgcatatgaattgatgttgtttataatgttgtatatatacattaaatggattatgttgataatt 32219  T
Q  93 gagatgttgtttattgcattcgatattgttatatcacgatga-tttgcatact-gttttgttgctgtttgttgtttaactaagttgcatgagtcgatcca 190  Q
    |||| |||| | ||| |||||||||||||||||||| ||||| ||||||||||  || ||||| |||||||| |||| ||||| ||||||||||| || |    
T  32218 gagacgttgatgattacattcgatattgttatatcatgatgattttgcatactacttatgttgttgtttgttatttatctaagctgcatgagtcggtcta 32119  T
Q  191 ggttgatgatgatgatgt 208  Q
     | |||||||||||||||    
T  32118 agatgatgatgatgatgt 32101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 132878 - 132661
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgta--tatacattaaatggatt------ataaat 92  Q
    |||||||||||  |||||||||| | |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||      |||| |    
T  132878 ttgtttatcttactgttgttgttccagtaagactgatgcatatgaattgatgttgtttataatgttgtatatatacattaaatggattatgttgataatt 132779  T
Q  93 gagatgttgtttattgcattcgatattgttatatcacgatga-tttgcatact-gttttgttgctgtttgttgtttaactaagttgcatgagtcgatcca 190  Q
    |||| |||| | ||| |||||||||||||| ||||| ||||| ||||||||||  || |||||||||||||| |||| ||||| ||||||||||| || |    
T  132778 gagacgttgatgattacattcgatattgttgtatcatgatgattttgcatactacttatgttgctgtttgttatttatctaagctgcatgagtcggtcta 132679  T
Q  191 ggttgatgatgatgatgt 208  Q
     | |||||||||||||||    
T  132678 agatgatgatgatgatgt 132661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 62303 - 62224
Alignment:
Q  107 tgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||||| ||||| || |||| ||| |||||||  | ||||||||||||||||||||||||| |||||||||||    
T  62303 tgcattcgatattattataccatgatgtttttcatactgcctatgttgctgtttgttgtttaactaagctgcatgagtcg 62224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 134313 - 134212
Alignment:
Q  106 ttgcattcgatattgttatatcacgatg-atttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||| |||||| |||| ||| | || ||||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | ||||    
T  134313 ttgcatttgatattattatgtcatgctgtatttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctatgttgattaagatg 134215  T
Q  205 atg 207  Q
    |||    
T  134214 atg 134212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 136782 - 136681
Alignment:
Q  106 ttgcattcgatattgttatatcacgatg-atttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||| |||||| |||| ||| | || ||||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | ||||    
T  136782 ttgcatttgatattattatgtcatgctgtatttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatg 136684  T
Q  205 atg 207  Q
    |||    
T  136683 atg 136681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 139251 - 139150
Alignment:
Q  106 ttgcattcgatattgttatatcacgatg-atttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||| |||||| |||| ||| | || ||||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | ||||    
T  139251 ttgcatttgatattattatgtcatgctgtatttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatg 139153  T
Q  205 atg 207  Q
    |||    
T  139152 atg 139150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 144189 - 144088
Alignment:
Q  106 ttgcattcgatattgttatatcacgatg-atttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||| |||||| |||| ||| | || ||||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | ||||    
T  144189 ttgcatttgatattattatgtcatgctgtatttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatg 144091  T
Q  205 atg 207  Q
    |||    
T  144090 atg 144088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 26355594 - 26355816
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt--------gtatatacattaaatggattataaa- 91  Q
    ||||||||||| ||||| |||||   ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||        
T  26355594 ttgtttatctttttgttattgttctagtaagactgatgcatatgaattgatgttgtttataatgttatataattgtatatacattaaatggaatatgttg 26355693  T
Q  92 -----tgagatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
         |||||||||||| |||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||| |||||||||||    
T  26355694 atggctgagatgttgttgattgcattcgatattgttatatcgtgatgatttgcatactgcctatgttgttgtttgttgtttaactaagctgcatgagtcg 26355793  T
Q  186 atccaggttgatgatgatgatgt 208  Q
     || | |||||||||||||||||    
T  26355794 gtctaagttgatgatgatgatgt 26355816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 38855251 - 38855368
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| ||     
T  38855251 tgagatgttgttgatttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtct 38855350  T
Q  190 aggttgatgatgatgatg 207  Q
    | |||||| | |||||||    
T  38855351 aagttgattaagatgatg 38855368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 6520474 - 6520372
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |||||| | ||||    
T  6520474 ttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatg 6520375  T
Q  205 atg 207  Q
    |||    
T  6520374 atg 6520372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 21673825 - 21673707
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||||||| ||  | ||||| |||||||| |||||||| | ||||||||||| ||     
T  21673825 tgagatgttgttgatttgcattcgatattgttatatcatgatgatttgcataatgcctatgttgttgtttgttatttaactatgatgcatgagtcggtct 21673726  T
Q  190 aggttgatgatgatgatgt 208  Q
    | |||||||||||| ||||    
T  21673725 aagttgatgatgatcatgt 21673707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 23760844 - 23760962
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| | |||| |||||||||||||| |||||||| |||||||  | |||||||||||||| |||||||||| ||||||||||| ||     
T  23760844 tgagatgttgttgatttgaattcaatattgttatatcatgatgatttacatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtct 23760943  T
Q  190 aggttgatgatgatgatgt 208  Q
    | ||||| |||||||||||    
T  23760944 aagttgaagatgatgatgt 23760962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20498790 - 20498726
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  20498790 ttgtttatcttgatgttgatgtttcggtaagactgatgtatatgatttgatgttgtttataatgt 20498726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 5866292 - 5866369
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||| |||||||| |||| |||||||||||  | |||||||||||||| |||||||||| |||||||||||    
T  5866292 cattcgatattattatatcatgatggtttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcg 5866369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 21491098 - 21490999
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    ||||| ||||| |||||||| |||| |||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |||| ||| |||||||    
T  21491098 cattcaatattattatatcatgatggtttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgttgaagatgatg 21490999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 17141019 - 17140920
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    ||||||||||| |||| ||| ||||  ||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |||| ||| |||||||    
T  17141019 cattcgatattattatgtcatgatggattgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgttgaagatgatg 17140920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 21285718 - 21285623
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||| ||| ||||| ||||||||||||||| | || |||||||||||  | ||||| |||||||| |||||| ||| |||||||||||    
T  21285718 tgagatgttgttgatttgcatttgatattgttatatcatgttgttttgcatactgcctatgttgttgtttgttatttaacaaagctgcatgagtcg 21285623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 20498668 - 20498588
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||| ||||||||||||||| | |  ||| |||||||  | ||||||||||||||  |||||||||||||||||||||    
T  20498668 ttgcatttgatattgttatatcatgctattttacatactgcctatgttgctgtttgtttattaactaagttgcatgagtcg 20498588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 21249488 - 21249388
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactg-ttttgttgct-gtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgat 206  Q
    ||||||||||| |||||||| ||||| |||||||||| || |||||||  ||| || |||||||||| ||||||||||| || | |||| ||| ||||||    
T  21249488 cattcgatattattatatcatgatgaattgcatactgcttatgttgctatttttttatttaactaagctgcatgagtcggtctaagttgttgaagatgat 21249389  T
Q  207 g 207  Q
    |    
T  21249388 g 21249388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 21255326 - 21255226
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactg-ttttgttgct-gtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgat 206  Q
    ||||||||||| |||||||| ||||| |||||||||| || |||||||  ||| || |||||||||| ||||||||||| || | |||| ||| ||||||    
T  21255326 cattcgatattattatatcatgatgaattgcatactgcttatgttgctatttttttatttaactaagctgcatgagtcggtctaagttgttgaagatgat 21255227  T
Q  207 g 207  Q
    |    
T  21255226 g 21255226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17141140 - 17141070
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||| |||| ||||  |||| | ||||||||||||| |||||||| |||||| |||||||||| ||||    
T  17141140 ttgtttaccttgctgttaatgttccagtaagactgatgcttatgaattaatgttgcttataatgttatata 17141070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 21491219 - 21491154
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt 66  Q
    ||||||| |||| ||||  |||| | ||||||||||||| |||||||| |||||| ||||||||||    
T  21491219 ttgtttaccttgctgttaatgttccagtaagactgatgcctatgaattaatgttgcttataatgtt 21491154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 1484474 - 1484403
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  1484474 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 1484403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 5853382 - 5853453
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  5853382 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 5853453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 15203321 - 15203392
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  15203321 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcgctctaagttgattaagatgatg 15203392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 16199703 - 16199739
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||||| |||||||||| |||||||||||    
T  16199703 tgttgctgtttgttatttaactaagctgcatgagtcg 16199739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 19937096 - 19937167
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| ||| |||||| ||| |||||||||| ||||||||||| |||| |||||| | |||||||    
T  19937096 tttgtatactgttgtgtcgctgtt-gttatttaactaagctgcatgagtcggtccaagttgattaagatgatg 19937167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 20046285 - 20046356
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  20046285 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 20046356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 20403299 - 20403228
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  20403299 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 20403228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 22001825 - 22001754
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  22001825 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 22001754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 10435 - 10659
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatg--------ttgtatatacattaaatggatt------ 86  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||        |||||||||||||| ||| |||          
T  10435 ttgtttatcttgttgttgttgttccagtaagactgatgcatatgaattgatgttgtttataatgttatataattgtatatacattacatgaattatgttt 10534  T
Q  87 -ataaatgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagt 183  Q
     |||  |||||||||| | | ||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||| |||    
T  10535 gatatttgagatgttgatgacttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcataagt 10634  T
Q  184 cgatccaggttgatgatgatgatgt 208  Q
    || || | ||||| |||| ||||||    
T  10635 cggtctaagttgaagatggtgatgt 10659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 130132 - 129908
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt--------gtatatacattaaatggattat---- 88  Q
    |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||||||        |||||||||||| ||| |||||        
T  130132 ttgtttatcttgctgttgttgttccagtaagactgatgcatatgaattgatgttgtttacaatgttatataattgtatatacattacatgaattatgttt 130033  T
Q  89 ---aaatgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagt 183  Q
       |  |||||||||| | | ||||||||||||||||||||||| ||||||||||||||||  | ||||||||| |||| |||||||||| |||||||||    
T  130032 gatatttgagatgttgatgacttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtgtgttatttaactaagatgcatgagt 129933  T
Q  184 cgatccaggttgatgatgatgatgt 208  Q
    || || | ||||||||||| |||||    
T  129932 cggtctaagttgatgatgaagatgt 129908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 21565769 - 21565545
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt--------gtatatacattaaatggattat---- 88  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||        |||||||||||| ||| |||||        
T  21565769 ttgtttatcttgttgttgttgttctagtaagactgatgcatatgaattgatgttgtttataatgttatataattgtatatacattacatgaattatgttt 21565670  T
Q  89 ---aaatgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagt 183  Q
       |  ||| |||||| | | ||||||||||||||||||||||| ||||||||| ||||||  | ||||||| |||||| |||||||||| |||||||||    
T  21565669 gatatttgaaatgttgatgacttgcattcgatattgttatatcatgatgatttggatactgcctatgttgctatttgttatttaactaagctgcatgagt 21565570  T
Q  184 cgatccaggttgatgatgatgatgt 208  Q
    || || | |||||||||||||||||    
T  21565569 cggtctaagttgatgatgatgatgt 21565545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 19669122 - 19668902
Alignment:
Q  3 gtttatcttgttgttgttgtttcggtaagactgatgcatatgaat--tgatgttgtttataatgtt--------gtatatacattaaatggattataaat 92  Q
    ||||||||||||||||||||| | |||||||||||||||||||||  |||||||||||||||||||        |||||||||||| | |  ||||   |    
T  19669122 gtttatcttgttgttgttgttccagtaagactgatgcatatgaatattgatgttgtttataatgttatataattgtatatacattacaggacttatgttt 19669023  T
Q  93 gagat----gttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgt-tttgttgctgtttgttgtttaactaagttgcatgagtcga 186  Q
    || ||    |||||| ||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||| || |||| ||||||     
T  19669022 gatatttgagttgttgatttgcattcgatattgttatatcacgatgatttgcatactgtctatgttgttgtttgttatttaactgagctgcaagagtcgg 19668923  T
Q  187 tccaggttgatgatgatgatg 207  Q
    || | ||||||||||||||||    
T  19668922 tctaagttgatgatgatgatg 19668902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 22959429 - 22959650
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt--------gtatatacattaaatggattataaat 92  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||  |||||| ||| ||||||        |||||||||||| |||  ||||   |    
T  22959429 ttgtttatcttgttgtttttgttccagtaagactgatgcatatgaatcaatgttggttaaaatgttatataattgtatatacattacatgacttatgttt 22959528  T
Q  93 gagat----gttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcga 186  Q
    || ||    |||||| ||| |||||| |||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| |||||||||||     
T  22959529 gatatttgagttgttgatttgcattcaatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcgg 22959628  T
Q  187 tccaggttgatgatgatgatgt 208  Q
    || | |||||||||||||||||    
T  22959629 tctaagttgatgatgatgatgt 22959650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 21329516 - 21329614
Alignment:
Q  110 attcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    ||||||||||||||||| | ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  21329516 attcgatattgttatattatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 21329614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 21502171 - 21502273
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| | |||||| |||||||  | ||||||||||||||  ||||||||| ||||||||||| || | |||||| | ||||    
T  21502171 ttgcattcgatattgttatatcatgctgatttacatactgcctatgttgctgtttgtttattaactaagctgcatgagtcggtctaagttgattaagatg 21502270  T
Q  205 atg 207  Q
    |||    
T  21502271 atg 21502273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 207
Target Start/End: Original strand, 19660854 - 19660952
Alignment:
Q  110 attcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||||||||  |||||||| |||| |||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |||| ||| |||||||    
T  19660854 attcgatatcattatatcaagatggtttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgttgaagatgatg 19660952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 26012035 - 26012130
Alignment:
Q  92 tgagatgttgtttattg-cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||| |||  |||| ||||||||||||||| | || |||||||||||  | ||||||||||||||  ||||||||| |||||||||||    
T  26012035 tgagatgttgttgattcacatttgatattgttatatcatgttgctttgcatactgcctatgttgctgtttgtttattaactaagctgcatgagtcg 26012130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 36314678 - 36314603
Alignment:
Q  111 ttcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||| |||||||| |||| ||||||||||   | |||||||||||||| |||||||||| |||||||||||    
T  36314678 ttcgatattattatatcatgatggtttgcatactacctatgttgctgtttgttatttaactaagctgcatgagtcg 36314603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 42245455 - 42245526
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||||||||||||||| || | |||||| | |||||||    
T  42245455 tttgtatactgttgtgttgctgtt-gttatttaactaagttgcatgagtcggtctaagttgattaagatgatg 42245526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 19660732 - 19660802
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||| |||| ||||  |||| | ||||||||||||| |||||||| |||||| |||||||||| ||||    
T  19660732 ttgtttaccttgctgttaatgttccagtaagactgatgcttatgaattaatgttgcttataatgttatata 19660802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 264858 - 264929
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  264858 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 264929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 10733030 - 10733101
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  10733030 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 10733101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 11581289 - 11581360
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  11581289 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 11581360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 20027000 - 20027036
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||||| |||||||||| |||||||||||    
T  20027000 tgttgctgtttgttatttaactaagctgcatgagtcg 20027036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 20909084 - 20909013
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| ||||||| |||||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  20909084 tttgtatactgttgtgttgct-tttgttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 20909013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 20918038 - 20918109
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  20918038 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 20918109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 29330006 - 29329935
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  29330006 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 29329935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 39245208 - 39245137
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  39245208 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 39245137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 39363456 - 39363385
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  39363456 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 39363385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 19385 - 19267
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| ||     
T  19385 tgagatgttgttgatttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtct 19286  T
Q  190 aggttgatgatgatgatgt 208  Q
    | |||||||||||||||||    
T  19285 aagttgatgatgatgatgt 19267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 18005767 - 18005649
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||| || |||||||||||||| |||||||||| ||||||||||| ||     
T  18005767 tgagatgttgttgatttgcattcgatattgttatatcatgatgatttccatactgcttatgttgctgtttgttatttaactaagctgcatgagtcggtct 18005668  T
Q  190 aggttgatgatgatgatgt 208  Q
    | |||||||||||||||||    
T  18005667 aagttgatgatgatgatgt 18005649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 811146 - 811249
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| ||||||||||||||||  | ||||||| |||||| |||||||||| ||||||||||| || | |||||||||||||    
T  811146 ttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctatttgttatttaactaagctgcatgagtcggtctaagttgatgatgatg 811245  T
Q  205 atgt 208  Q
    ||||    
T  811246 atgt 811249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 44014284 - 44014181
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| ||||||||||||||||  | ||||| |||||||| |||||||||| ||||||||||| || | |||||||||||||    
T  44014284 ttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcggtctaagttgatgatgatg 44014185  T
Q  205 atgt 208  Q
    ||||    
T  44014184 atgt 44014181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 67866 - 67749
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| ||     
T  67866 tgagatgttgttgatttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtct 67767  T
Q  190 aggttgatgatgatgatg 207  Q
    | |||||| | |||||||    
T  67766 aagttgattaagatgatg 67749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 16219732 - 16219835
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| ||||||||||||||||  | ||||| |||||||| |||||||||| | ||||||||| || | ||||| |||||||    
T  16219732 ttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgttgtttgttatttaactaagctacatgagtcggtctaagttgaagatgatg 16219831  T
Q  205 atgt 208  Q
    ||||    
T  16219832 atgt 16219835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 47831913 - 47831811
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgt-tttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| |||||| |||||||||| | ||||| |||||||| |||||||||| ||||||||||| || | |||||| | ||||    
T  47831913 ttgcattcgatattgttatatcatgatgatatgcatactgtctatgttgttgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatg 47831814  T
Q  205 atg 207  Q
    |||    
T  47831813 atg 47831811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 34200889 - 34200790
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    ||||||||||| |||||||| |||| |||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |||| ||| |||||||    
T  34200889 cattcgatattattatatcatgatggtttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgttgaagatgatg 34200790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 28505320 - 28505415
Alignment:
Q  113 cgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    ||||||| |||||||| |||| |||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | | |||||| |||||||    
T  28505320 cgatattattatatcatgatggtttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagatgatgaagatgatg 28505415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 16495505 - 16495428
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||| |||||||| |||| |||||||||||  | ||||| |||||||| |||||||||| |||||||||||    
T  16495505 cattcgatattattatatcatgatggtttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcg 16495428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 16056448 - 16056354
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||| ||| ||||| ||||||||||||||| | || |||||||| ||| | |||||||||||||| |||||||||| ||||| |||||    
T  16056448 tgagatgttgttgatttgcatttgatattgttatatcatgttg-tttgcataatgtctatgttgctgtttgttatttaactaaggtgcatcagtcg 16056354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15116707 - 15116643
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    ||||||||| |  |||| ||||||| |||||||||||| |||||| |||||||| ||||||||||    
T  15116707 ttgtttatcctactgttattgtttcagtaagactgatgtatatgagttgatgttatttataatgt 15116643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 2280119 - 2280214
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||| ||| ||||| |||||| |||||||| | || |||||||||||  | ||||| ||||||||  ||||||||| |||||||||||    
T  2280119 tgagatgttgttgatttgcatttgatattattatatcatgctgttttgcatactgcctatgttgttgtttgtttattaactaagctgcatgagtcg 2280214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 207
Target Start/End: Original strand, 11996045 - 11996144
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    ||||| ||||| |||||||| |||| |||||||||||  | ||||| ||||||||  ||||||||| ||||||||||| || | |||| ||| |||||||    
T  11996045 cattcaatattattatatcatgatggtttgcatactgcctatgttgttgtttgttaattaactaagatgcatgagtcggtctaagttgttgaagatgatg 11996144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 12255809 - 12255887
Alignment:
Q  109 cattcgatattgttatatcacga--tgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtc 184  Q
    |||| ||||||||||||||| ||  ||||||||||||||  | ||||| |||||||| |||||||||| ||||||||||    
T  12255809 catttgatattgttatatcatgaattgatttgcatactgactatgttgttgtttgttatttaactaagctgcatgagtc 12255887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 10063818 - 10063912
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtc 184  Q
    |||||||||||||| |||  ||||||||| |||||||| |||| | ||||||| |  | |||||||| |||||  ||||||||||||||||||||    
T  10063818 tgagatgttgtttacttgtgttcgatattattatatcatgatgttgtgcataccgcctatgttgctgattgttaattaactaagttgcatgagtc 10063912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 18430834 - 18430713
Alignment:
Q  87 ataaatgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgc-atactgttttgttgctgtttgttgtttaactaagttgcatgagtc 184  Q
    |||| |||||||||||| | ||||||| |||||| |||| ||| |||| |||   |||||||| |||||||||| ||| |||||||||| ||||||||||    
T  18430834 ataattgagatgttgttgacttgcatttgatattattatgtcatgatgtttttatatactgttgtgttgctgtt-gttatttaactaagctgcatgagtc 18430736  T
Q  185 gatccaggttgatgatgatgatg 207  Q
    | || | |||||| | |||||||    
T  18430735 ggtctaagttgattaagatgatg 18430713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 28505195 - 28505265
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||| ||||||||   |||| | ||||||||||||| |||||||| |||||| |||||||||| ||||    
T  28505195 ttgtttaccttgttgtcaatgttccagtaagactgatgcttatgaattaatgttgcttataatgttatata 28505265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 456393 - 456322
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  456393 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 456322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 11393377 - 11393448
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  11393377 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 11393448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 11972568 - 11972497
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  11972568 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 11972497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 11995950 - 11995994
Alignment:
Q  27 gtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||||||||| |||||||| |||||| |||||||||| ||||    
T  11995950 gtaagactgatgcttatgaattaatgttgcttataatgttatata 11995994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 14949212 - 14949283
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  14949212 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 14949283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15113170 - 15113106
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    ||||||||| || |||| ||||||| |||||||||||  |||||| ||||||||  |||||||||    
T  15113170 ttgtttatcctgctgttattgtttcagtaagactgatttatatgagttgatgttaattataatgt 15113106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 15376803 - 15376874
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  15376803 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 15376874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 16232592 - 16232521
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  16232592 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 16232521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 16410131 - 16410060
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  16410131 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 16410060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 18640344 - 18640273
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  18640344 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 18640273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 20385213 - 20385284
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  20385213 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 20385284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 21189685 - 21189756
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  21189685 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 21189756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 24702310 - 24702239
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  24702310 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 24702239  T

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Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 24704760 - 24704689
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  24704760 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 24704689  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 32125563 - 32125492
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  32125563 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 32125492  T

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Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 41522989 - 41522918
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  41522989 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 41522918  T

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Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 41525451 - 41525380
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  41525451 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 41525380  T

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Target: scaffold1984 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold1984
Description:

Target: scaffold1984; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 352 - 132
Alignment:
Q  5 ttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt--------gtatatacattaaatggattat-------a 89  Q
    |||||||| ||||||||||   || |||||||| ||||||||||||||||||||||||| ||        |||||||||||| ||| |||||       |    
T  352 ttatcttgctgttgttgttctagtgagactgatacatatgaattgatgttgtttataatattatataattgtatatacattacatgaattatgtttgata 253  T
Q  90 aatgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgat 187  Q
      |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||  | ||||| ||||||||||||||||||| ||||||| ||| |    
T  252 tttgagatgttgttgatttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgttgtttgttgtttaactaagctgcatgaatcggt 153  T
Q  188 ccaggttgatgatgatgatgt 208  Q
    | | |||||||||||||||||    
T  152 ctaagttgatgatgatgatgt 132  T

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Target: scaffold0621 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: scaffold0621
Description:

Target: scaffold0621; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 6656 - 6539
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| ||     
T  6656 tgagatgttgttgatttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtct 6557  T
Q  190 aggttgatgatgatgatg 207  Q
    | ||||||||||||||||    
T  6556 aagttgatgatgatgatg 6539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0621; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8696 - 8632
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    |||||||||||| || ||||||| | |||||||||||| ||||||||||||||||||||||||||    
T  8696 ttgtttatcttgctgatgttgttccagtaagactgatgtatatgaattgatgttgtttataatgt 8632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0621; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 8572 - 8492
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||| ||||||||||||||| | || |||||||||||  | ||||| |||||||| |||||||||| |||||||||||    
T  8572 ttgcatttgatattgttatatcatgctgttttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcg 8492  T

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Target: scaffold0211 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 28705 - 28792
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggattat 88  Q
    |||||||||||| |||  ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28705 ttgtttatcttgctgtcattgttccagtaagactgatgcatatgaattgatgttgtttataatgttatatatacattaaatggattat 28792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 28808 - 28888
Alignment:
Q  130 gatgatttgcatactgttt-tgttgctgtt-tgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatgt 208  Q
    ||||||||||||||||  | |||||||||  ||||||||||||||| ||||||||||| || | |||||||||||||||||    
T  28808 gatgatttgcatactgcctatgttgctgtaatgttgtttaactaagctgcatgagtcggtctaagttgatgatgatgatgt 28888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 63; Significance: 1e-27; HSPs: 6)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 92 - 208
Target Start/End: Complemental strand, 100495 - 100377
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| |||||||||||| |||||||| ||||||||||||||||  | |||||||||||||| |||||||||| ||||||||||| ||     
T  100495 tgagatgttgttgatttgcattcgatattattatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtct 100396  T
Q  190 aggttgatgatgatgatgt 208  Q
    | |||||||||||||||||    
T  100395 aagttgatgatgatgatgt 100377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 40174 - 40292
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||  | ||||||||||| || |||||||||| ||||||||||  ||     
T  40174 tgagatgttgttgatttgcattcgatattgttatatcatgatgatttgcctactgcctatgttgctgtttattatttaactaagctgcatgagtcagtct 40273  T
Q  190 aggttgatgatgatgatgt 208  Q
    | |||||||||||||||||    
T  40274 aagttgatgatgatgatgt 40292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 101561 - 101502
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatgt 208  Q
    ||||| ||||||||||||||||||| ||||||| ||| || | |||||||||||||||||    
T  101561 tgttgttgtttgttgtttaactaagctgcatgaatcggtctaagttgatgatgatgatgt 101502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 119937 - 119879
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||||||||||||| |||||||||| ||||||||||| || | |||| ||| |||||||    
T  119937 tgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgttgaagatgatg 119879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 44526 - 44455
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  44526 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 44455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 94483 - 94412
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  94483 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 94412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 2223 - 2284
Alignment:
Q  27 gtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggattat 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2223 gtaagactgatgcatatgaattgatgttgtttataatgttgtatatacattaaatggattat 2284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 45686 - 45910
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgtt--------gtatatacattaaatggattat---- 88  Q
    |||||||| ||| |||  ||||| | ||||||||||||||||||||||||||||||||||||||||        |||||||||| | ||| |||||        
T  45686 ttgtttatattgctgtaattgttccagtaagactgatgcatatgaattgatgttgtttataatgttatataattgtatatacatcacatgaattatgttt 45785  T
Q  89 ---aaatgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagt 183  Q
       || |||||||||| | | || |||||||||||||||||||| ||||||||||||||||  | | || ||||||||| |||||||||| |||||||||    
T  45786 gataattgagatgttgatgacttacattcgatattgttatatcatgatgatttgcatactgcctatttttctgtttgttatttaactaagctgcatgagt 45885  T
Q  184 cgatccaggttgatgatgatgatgt 208  Q
    || || | |||||||||||||||||    
T  45886 cggtctaagttgatgatgatgatgt 45910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0556 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0556
Description:

Target: scaffold0556; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 7036 - 6838
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatg--------ttgtatatacattaaatggattataaat 92  Q
    |||||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||||        |||||||||||||| |||  ||||   |    
T  7036 ttgtttatcttgctgttgttgttccagtaagactgatgcatatgaattaatgttgtttataatgttatataattgtatatacattacatgacttatgttt 6937  T
Q  93 gagat----gttgttta-ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    || ||    |||||| | |||||||| |||||||||||||| ||||||||||||||||  | |||||||||||||| ||||||| || |||||||||||    
T  6936 gatatttgagttgttgatttgcattcaatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactgagctgcatgagtcg 6838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 23897 - 24001
Alignment:
Q  105 attgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgat 203  Q
    |||||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| |||||||||| | ||||||||| || | ||||| ||||||    
T  23897 attgcattcgatattgttatatcatgatgatttgcatactgcctatgttgctgtttgttatttaactaagctacatgagtcggtctaagttgaagatgat 23996  T
Q  204 gatgt 208  Q
    |||||    
T  23997 gatgt 24001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 22685 - 22788
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgt-tttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||| |||||||||| ||||||||||| || | ||||| | |||||    
T  22685 ttgcattcgatattgttatatcatgatgatttgcatactgtctatgtcgctgtttgttatttaactaagctgcatgagtcggtctaagttgaaggtgatg 22784  T
Q  205 atgt 208  Q
    ||||    
T  22785 atgt 22788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 2806 - 2924
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||  | ||| |||||||||| |||||||||| ||||||||||| ||     
T  2806 tgagatgttgttgatttgcatttgatattgttatatcatgatgatttgcatactgcctatgtagctgtttgttatttaactaagctgcatgagtcggtct 2905  T
Q  190 aggttgatgatgatgatgt 208  Q
    | | |||||||||||||||    
T  2906 aagatgatgatgatgatgt 2924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 5764 - 5654
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||| |||||||  | |||||||||||||| ||| |||||| ||||||||||| ||     
T  5764 tgagatgttgttgatttgcattcgatattgttatatcatgatgattttcatactgcctatgttgctgtttgttattttactaagctgcatgagtcggtct 5665  T
Q  190 aggttgatgat 200  Q
    | |||||||||    
T  5664 aagttgatgat 5654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 6138 - 6240
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| ||||||||||||||||  | |||| ||||||||| |||||||||| ||||||||||| || | |||||| | ||||    
T  6138 ttgcattcgatattgttatatcatgatgatttgcatactgcctatgttactgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatg 6237  T
Q  205 atg 207  Q
    |||    
T  6238 atg 6240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 2645 - 2763
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| |||||| ||||||||||| || |||||||| |||||||  | ||||| |||||||| |||||||||| ||||||||||| ||     
T  2645 tgagatgttgttgatttgcattcaatattgttataacatgatgatttacatactgcctatgttgatgtttgttatttaactaagctgcatgagtcggtct 2744  T
Q  190 aggttgatgatgatgatgt 208  Q
    | |||||||||||||||||    
T  2745 aagttgatgatgatgatgt 2763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 12872 - 12770
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| ||||||||||||| ||  | ||||| |||||||| |||| ||||| ||||||||||| || | ||||||||| |||    
T  12872 ttgcattcgatattgttatatcatgatgatttgcatattgcctatgttgttgtttgttatttagctaagctgcatgagtcggtctaagttgatgattatg 12773  T
Q  205 atg 207  Q
    |||    
T  12772 atg 12770  T

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Target: scaffold0333 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 6717 - 6615
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    |||||||||||||||||||||||  |||||||||||||||  | ||||| |||||||| |||||||||| ||||||||||| || | |||||| | ||||    
T  6717 ttgcattcgatattgttatatcatcatgatttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatg 6618  T
Q  205 atg 207  Q
    |||    
T  6617 atg 6615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 14097 - 13995
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    |||||||||||||||||||||||  |||||||||||||||  | ||||| |||||||| |||||||||| ||||||||||| || | |||||| | ||||    
T  14097 ttgcattcgatattgttatatcatcatgatttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatg 13998  T
Q  205 atg 207  Q
    |||    
T  13997 atg 13995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 32656 - 32562
Alignment:
Q  92 tgagatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||| |||||||| ||||||||||||||| | || |||||||||||  | ||||||||||||||  ||||||||| |||||||||||    
T  32656 tgagatgttgttgattgcatttgatattgttatatcatgttgttttgcatactgcctatgttgctgtttgtttattaactaagctgcatgagtcg 32562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 15792 - 15894
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    |||||||||||||||||||||||  |||||||||||||||  | ||||| |||||||| |||||||||| ||||||||||| || | |||||| | ||||    
T  15792 ttgcattcgatattgttatatcatcatgatttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatg 15891  T
Q  205 atg 207  Q
    |||    
T  15892 atg 15894  T

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Target: scaffold0008 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 14697 - 14815
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| ||| ||||||||||||  ||||||| |||||||| | |||||  | ||||||||||||||  ||||||||| ||||||||||| ||     
T  14697 tgagatgttgttgatttgcattcgatattactatatcatgatgattttcttactgcctatgttgctgtttgttagttaactaagctgcatgagtcggtct 14796  T
Q  190 aggttgatgatgatgatgt 208  Q
    | |||||||||||||||||    
T  14797 aagttgatgatgatgatgt 14815  T

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Target: scaffold1765 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold1765
Description:

Target: scaffold1765; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 1184 - 1108
Alignment:
Q  110 attcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||||||||||| ||||||||||||||||  | ||||| |||||||| |||||||||| |||||||||||    
T  1184 attcgatattgttatatcatgatgatttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcg 1108  T

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Target: scaffold1765; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 1306 - 1239
Alignment:
Q  4 tttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    |||||||||||||||||||| | |||||||||||| |||||| |||||||||||  ||||||| ||||    
T  1306 tttatcttgttgttgttgttccagtaagactgatgtatatgatttgatgttgttgttaatgttatata 1239  T

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Target: scaffold0138 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 208
Target Start/End: Complemental strand, 13045 - 12942
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||||||||||||||| | ||||||||||||||  | ||||| |||||||| ||||||| ||  |||||||||| || | ||||| |||||||    
T  13045 ttgcattcgatattgttatatcatgctgatttgcatactgcctatgttgttgtttgttatttaactgagcagcatgagtcggtctaagttgaagatgatg 12946  T
Q  205 atgt 208  Q
    ||||    
T  12945 atgt 12942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 11395 - 11296
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    ||||||||||| |||||||| |||| |||||||||||  | |||||||||||||| |||||||||| ||||||||||| || | |||| ||| |||||||    
T  11395 cattcgatattattatatcatgatggtttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcggtctaagttgttgaagatgatg 11296  T

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Target: scaffold0046; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 2100 - 2001
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    ||||||||||| |||||||| |||| |||||||||||  | ||||  |||||||| |||||||||| ||||||||||| || | |||| ||| |||||||    
T  2100 cattcgatattattatatcatgatggtttgcatactgcctatgtttgtgtttgttatttaactaagctgcatgagtcggtctaagttgttgaagatgatg 2001  T

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Target: scaffold0074 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 38717 - 38795
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagt 183  Q
    ||||||| ||||||||||||||| | || |||||||||||| | |||||||||||||| |||||||||| |||||||||    
T  38717 ttgcatttgatattgttatatcatgttgttttgcatactgtctatgttgctgtttgttatttaactaaggtgcatgagt 38795  T

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Target: scaffold0078 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 10633 - 10553
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||||||||||||||| ||||||||||||||||  | ||||| |||||||| |||||  ||| |||||||||||    
T  10633 ttgcattcgatattgttatatcatgatgatttgcatactgcctatgttgttgtttgttatttaaaaaagctgcatgagtcg 10553  T

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Target: scaffold0530 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 1049 - 1151
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatact-gttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatg 204  Q
    ||||||||||| ||||||||||| |||||| ||||||||   | ||||| |||||||| |||||||||| ||||||||||| || | |||||| | ||||    
T  1049 ttgcattcgatgttgttatatcatgatgatctgcatactacctatgttgttgtttgttatttaactaagctgcatgagtcggtctaagttgattaagatg 1148  T
Q  205 atg 207  Q
    |||    
T  1149 atg 1151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 1087 - 1164
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||| |||||||| |||| |||||||||||  | ||||| |||||||| |||||||||| |||||||||||    
T  1087 cattcgatattattatatcatgatggtttgcatactgcctatgttgttgtttgttatttaactaagctgcatgagtcg 1164  T

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Target: scaffold2014 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold2014
Description:

Target: scaffold2014; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 1130 - 1058
Alignment:
Q  114 gatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||||||| | || |||||||||||  | |||||||||||||| |||||||||| |||||||||||    
T  1130 gatattgttatatcatgctgttttgcatactgcctatgttgctgtttgttatttaactaagctgcatgagtcg 1058  T

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Target: scaffold0507 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0507
Description:

Target: scaffold0507; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 7952 - 8016
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    |||||||||||| || ||||||| | || ||||||||| |||||| |||||||||||||||||||    
T  7952 ttgtttatcttgctgatgttgttccagtgagactgatgtatatgatttgatgttgtttataatgt 8016  T

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Target: scaffold0261 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 15764 - 15665
Alignment:
Q  109 cattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    ||||||||||| |||||||| |||| |||| ||||||  | |||||||||||||| |||||||||| |||| |||||| || | |||||| | |||||||    
T  15764 cattcgatattattatatcatgatggtttgtatactgcctatgttgctgtttgttatttaactaagctgcacgagtcggtctaagttgattaagatgatg 15665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1257 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1257
Description:

Target: scaffold1257; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 2218 - 2272
Alignment:
Q  92 tgagatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg 145  Q
    |||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||    
T  2218 tgagatgttgttgatttgcatttgatattgttatatcatgatgatttgcatactg 2272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 13247 - 13154
Alignment:
Q  94 agatgttgtttatt-gcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||| ||| ||||| ||||||||||||||| | || |||||||||||  | ||||| ||||||||  ||||||||| |||||||||||    
T  13247 agatgttgttgatttgcatttgatattgttatatcatgctgttttgcatactgcctatgttgttgtttgtttattaactaagctgcatgagtcg 13154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 225527 - 225474
Alignment:
Q  92 tgagatgttgtttattgcattcgatattgttatatcacgatgatttgcatactg 145  Q
    |||||||||||| |||||||| |||||| |||||||||| || |||||||||||    
T  225527 tgagatgttgttgattgcatttgatattattatatcacgctgttttgcatactg 225474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 9185 - 9145
Alignment:
Q  105 attgcattcgatattgttatatcacgatgatttgcatactg 145  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  9185 attgcattcgatattgttatatcatgatgagttgcatactg 9145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 12674 - 12594
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||| ||||||||||||||| | || |||||||||||  | ||||||||||||||  ||||||||| | |||||||||    
T  12674 ttgcatttgatattgttatatcatgctgttttgcatactgcctatgttgctgtttgtttattaactaagctacatgagtcg 12594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12795 - 12731
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    |||||||||||| |||||||||||| ||||| || |||  ||| | |||||||||||||||||||    
T  12795 ttgtttatcttgctgttgttgtttcagtaagtctaatgtgtattatttgatgttgtttataatgt 12731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 53442 - 53506
Alignment:
Q  1 ttgtttatcttgttgttgttgtttcggtaagactgatgcatatgaattgatgttgtttataatgt 65  Q
    |||||||||||  ||||| |||| | ||||||||||||  ||||| |||||||||||||||||||    
T  53442 ttgtttatctttatgttgatgttccagtaagactgatgtttatgatttgatgttgtttataatgt 53506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 181
Target Start/End: Original strand, 53564 - 53640
Alignment:
Q  106 ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatga 181  Q
    ||||||| ||||||||||||||| | || |||||||||||  | ||||||||||||||  ||||||||| |||||||    
T  53564 ttgcatttgatattgttatatcatgttgttttgcatactgcctatgttgctgtttgtttattaactaagctgcatga 53640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 11585 - 11491
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtc 184  Q
    |||||||||||||| || | | ||||||| |||||||| |||| |||||||||||  | |||||||| |||||  ||||||||| ||||||||||    
T  11585 tgagatgttgtttacttacgtgcgatattattatatcatgatgttttgcatactgcctatgttgctgattgttaattaactaagctgcatgagtc 11491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 184
Target Start/End: Original strand, 38256 - 38350
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactg-ttttgttgctgtttgttgtttaactaagttgcatgagtc 184  Q
    |||||||||||||| || | | ||||||| |||||||| |||| |||||||||||  | |||||||| |||||  ||||||||| ||||||||||    
T  38256 tgagatgttgtttacttacgtgcgatattattatatcatgatgttttgcatactgcctatgttgctgattgttaattaactaagctgcatgagtc 38350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0540 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0540
Description:

Target: scaffold0540; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 3151 - 3267
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactgttt-tgttgctgtttgttgtttaactaagttgcatgagtcgatcc 189  Q
    |||||||||||| | ||||||| |||||| |||| ||| | || |||| ||||||  | |||||||||| ||| |||||||||| ||||||||||| ||     
T  3151 tgagatgttgttgacttgcatttgatattattatgtcatgttgttttgtatactgcctatgttgctgtt-gttatttaactaagctgcatgagtcggtct 3249  T
Q  190 aggttgatgatgatgatg 207  Q
    | |||||||| |||||||    
T  3250 aagttgatgaagatgatg 3267  T

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Target: scaffold0444 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 13464 - 13393
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  13464 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 13393  T

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Target: scaffold0420 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0420
Description:

Target: scaffold0420; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 6343 - 6379
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    ||||||||||||||  |||||||||||||||||||||    
T  6343 tgttgctgtttgttcattaactaagttgcatgagtcg 6379  T

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Target: scaffold0254 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 20819 - 20748
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  20819 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 20748  T

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Target: scaffold0175 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 34321 - 34277
Alignment:
Q  27 gtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||||||||| |||||||| |||||| |||||||||| ||||    
T  34321 gtaagactgatgcttatgaattaatgttgcttataatgttatata 34277  T

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Target: scaffold0161 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 2365 - 2409
Alignment:
Q  27 gtaagactgatgcatatgaattgatgttgtttataatgttgtata 71  Q
    ||||||||||||| |||||||| |||||| |||||||||| ||||    
T  2365 gtaagactgatgcttatgaattaatgttgcttataatgttatata 2409  T

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Target: scaffold0145 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 9821 - 9750
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  9821 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 9750  T

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Target: scaffold0134 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 37893 - 37822
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  37893 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 37822  T

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Target: scaffold0106 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 1351 - 1315
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||||| |||||||||| |||||||||||    
T  1351 tgttgctgtttgttatttaactaagctgcatgagtcg 1315  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 51644 - 51608
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||||| |||||||||| |||||||||||    
T  51644 tgttgctgtttgttatttaactaagctgcatgagtcg 51608  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 207
Target Start/End: Complemental strand, 116546 - 116431
Alignment:
Q  92 tgagatgttgttta-ttgcattcgatattgttatatcacgatgatttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatcca 190  Q
    |||||||||||| | ||||||| |||||  |||| ||| | || |||| |||||||| ||| |||||| ||| |||||||||| ||||||||||| || |    
T  116546 tgagatgttgttgacttgcatttgatatgattatgtcatgctgttttgtatactgttgtgtcgctgtt-gttatttaactaagctgcatgagtcggtcta 116448  T
Q  191 ggttgatgatgatgatg 207  Q
     |||||| | |||||||    
T  116447 agttgattaagatgatg 116431  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 174828 - 174792
Alignment:
Q  149 tgttgctgtttgttgtttaactaagttgcatgagtcg 185  Q
    |||||||||||||| |||||||||| |||||||||||    
T  174828 tgttgctgtttgttatttaactaagctgcatgagtcg 174792  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 158540 - 158611
Alignment:
Q  135 tttgcatactgttttgttgctgtttgttgtttaactaagttgcatgagtcgatccaggttgatgatgatgatg 207  Q
    |||| |||||||| |||||||||| ||| |||||||||| ||||||||||| || | |||||| | |||||||    
T  158540 tttgtatactgttgtgttgctgtt-gttatttaactaagctgcatgagtcggtctaagttgattaagatgatg 158611  T

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