View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19633_low_2 (Length: 515)
Name: NF19633_low_2
Description: NF19633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19633_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 224 - 496
Target Start/End: Original strand, 8442341 - 8442613
Alignment:
| Q |
224 |
tatatacacacacccgtctctgtactagaggaaagacctaaacatgccttgatcatctttcactattggtacaaatggtccattcgtgttgcaatctaag |
323 |
Q |
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| T |
8442341 |
tatatatatacacccgtctctgtactagaggaaagacctaaacatgcctcgatcatctttcactattggtacaaatggtccattcgtgttgcaatctaag |
8442440 |
T |
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| Q |
324 |
aaaaagcaagaaattatgattattatttttaaagcagcaagaattatgatcaatgtattaacacttgtatgtataaaacttaaagaaccccttgagattt |
423 |
Q |
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| T |
8442441 |
aaaaagcaagaaattatgattattatttttaaagcagcaagaattatgatcaatgtattaacacttgtatgtataaaacttaaagaaccccttgagattt |
8442540 |
T |
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| Q |
424 |
cacgccattgccgacaattaaaacacctcgtctatttgtaaatgcatgatactagttactaatcaaatgatct |
496 |
Q |
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| T |
8442541 |
cacgccattgccgacaattaaaacacctcgtctatttgtaaatgcgtgatactagttactaatcaaatgatct |
8442613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8441967 - 8442168
Alignment:
| Q |
1 |
aataaggtaacagcaaactgatttgactaggagtaatagattaaatagttgaagatgttggatcttcttcaagatctgacctatggagaccactttgaat |
100 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8441967 |
aataaggtaagagtaaactgatttgactaggagtaatagattaa-tagttgaagatgttggatcttcttcaagatctgacctatggagaccactttgaat |
8442065 |
T |
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| Q |
101 |
aaataaatactttactttctgttaatcctctagaaggagattgttacattttttgtgttacattgttatatgtaataaaaagggctgtaactattacaaa |
200 |
Q |
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| T |
8442066 |
a----aatactttactttctgttaatcctctagaaggagattgttacattttttgtgttacattgttatatgtaataaaaagggctgtaattattacaaa |
8442161 |
T |
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| Q |
201 |
ttaatta |
207 |
Q |
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| T |
8442162 |
ttaatta |
8442168 |
T |
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